AT1G56630.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.869 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : alpha/beta-Hydrolases superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: triglyceride lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G42930.1); Has 1532 Blast hits to 1526 proteins in 353 species: Archae - 0; Bacteria - 521; Metazoa - 41; Fungi - 272; Plants - 392; Viruses - 3; Other Eukaryotes - 303 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:21223593..21226943 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 56240.90 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.93 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.16 | ||||||||||||||||||||||||||||||||
| Length | 485 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVQPKNYFVL DPREATVTDL MRLLFYSDLE NRKFVDTSVE NLENRLCEFR GRWIIFVSIV VQKLLIILRK PLSFLGFALG FWLNLPSSNG GFFKIFLNLV 101: KGRFIWPEKT SATFASINGN LDQKVELGLG RSIKIGDERY KPLLSIMASK LAYENEHFIR SVLQDHWQMD LLGFYSCPND FDQTRSTEVI VIRDTKDNPN 201: LIVVSFRGTD PFNADDWCTD LDLSWHNVMN VGKIHGGFMK ALGLPKEGWY EEINSDQTQN KTSQLAYYTI LRQLKEVFEQ NPTSKFILSG HSLGGALAIL 301: FTAVLIMHDE KEMLERLEGV YTFGQPRVGD EDFGIYMKDK LKEFDVKYKR YVYCNDMVPR LPFDDKTLMF KHFGGCLYCD SFYKGKVEEE EPNKNYFNIF 401: WVIPKIINAV WELIRSFIIS CWQGREYREG WLLTCFRLVA LLIPGLPAHF PNEYVNVALL GNFPPQVPDS QNLPDDDLNV ALLRN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)