suba logo
AT1G14220.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribonuclease T2 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribonuclease T2 family protein; FUNCTIONS IN: ribonuclease T2 activity, endoribonuclease activity, RNA binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, root, egg cell; CONTAINS InterPro DOMAIN/s: Ribonuclease T2 (InterPro:IPR001568), Ribonuclease T2, active site (InterPro:IPR018188); BEST Arabidopsis thaliana protein match is: ribonuclease 3 (TAIR:AT1G26820.1); Has 2564 Blast hits to 2563 proteins in 502 species: Archae - 0; Bacteria - 420; Metazoa - 283; Fungi - 235; Plants - 1517; Viruses - 7; Other Eukaryotes - 102 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G14220-MONOMEReggNOG:ENOG4111M7GeggNOG:KOG1642EMBL:AC007576
EMBL:CP002684EnsemblPlants:AT1G14220EnsemblPlants:AT1G14220.1entrez:837983
Gene3D:3.90.730.10GeneID:837983GO:GO:0003723GO:GO:0033897
Gramene:AT1G14220.1hmmpanther:PTHR11240hmmpanther:PTHR11240:SF19HOGENOM:HOG000238569
InterPro:IPR001568InterPro:IPR018188InterPro:IPR033130KEGG:ath:AT1G14220
KO:K01166OMA:PYIECNVPANTHER:PTHR11240Pfam:PF00445
PhylomeDB:Q9XI64PIR:B86276PROSITE:PS00530PROSITE:PS00531
Proteomes:UP000006548RefSeq:NP_563941.1scanprosite:PS00530scanprosite:PS00531
SMR:Q9XI64STRING:3702.AT1G14220.1SUPFAM:SSF55895TAIR:AT1G14220
UniGene:At.51607UniProt:Q9XI64
Coordinates (TAIR10) chr1:-:4858642..4859601
Molecular Weight (calculated) 25690.10 Da
IEP (calculated) 4.89
GRAVY (calculated) -0.42
Length 228 amino acids
Sequence (TAIR10)
(BLAST)
001: MGAKGCVNVL LKLLVFQGLF VSRPQEDFDF FYFVLQWPGA YCDTSRACCY PTSGKPAADF GIHGLWPNYN GGSWPSNCDP DSQFDRSQIS DLVSSLKKNW
101: PTLSCPSNEG FNFWEHEWEK HGTCSESVMD QHEYFENALK LKQKANLLQI LKNSGINPDD GFYNLDKITN AIKDGIGFTP GIECNKDPER NAQLHQIYIC
201: VDTSGTEFIE CPVLPRGSCP SQIQFSKF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)