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AT1G54630.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : acyl carrier protein 3
Curator
Summary (TAIR10)
encodes an acyl carrier protein expressed in leaves, roots, and dry seeds. Gene expression is not regulated by light.
Computational
Description (TAIR10)
acyl carrier protein 3 (ACP3); FUNCTIONS IN: acyl carrier activity; INVOLVED IN: fatty acid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, seedling growth; CONTAINS InterPro DOMAIN/s: Polyketide synthase, phosphopantetheine-binding (InterPro:IPR020806), Phosphopantetheine-binding (InterPro:IPR006163), Acyl carrier protein-like (InterPro:IPR009081), Acyl carrier protein (ACP) (InterPro:IPR003231), Phosphopantetheine attachment site (InterPro:IPR006162); BEST Arabidopsis thaliana protein match is: acyl carrier protein 2 (TAIR:AT1G54580.1); Has 6583 Blast hits to 6583 proteins in 2213 species: Archae - 0; Bacteria - 4430; Metazoa - 26; Fungi - 106; Plants - 345; Viruses - 2; Other Eukaryotes - 1674 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0236eggNOG:KOG1748EMBL:AC005388EMBL:AY054604
EMBL:AY072527EMBL:CP002684EMBL:X57699EnsemblPlants:AT1G54630
EnsemblPlants:AT1G54630.1entrez:841905ExpressionAtlas:P25702Gene3D:1.10.1200.10
GeneID:841905Genevisible:P25702GO:GO:0000036GO:GO:0009507
GO:GO:0009570HAMAP:MF_01217hmmpanther:PTHR20863hmmpanther:PTHR20863:SF29
HOGENOM:HOG000178184InParanoid:P25702InterPro:IPR003231InterPro:IPR006162
InterPro:IPR009081InterPro:IPR020806OMA:AFDIEMEPaxDb:P25702
Pfam:P25702Pfam:PF00550Pfscan:PS50075PhylomeDB:P25702
PIR:D96588PIR:S14965PRIDE:P25702PRO:PR:P25702
ProDom:PD000887PROSITE:PS00012PROSITE:PS50075ProteinModelPortal:P25702
Proteomes:UP000006548RefSeq:NP_564663.1scanprosite:PS00012SMART:SM00823
SMR:P25702STRING:3702.AT1G54630.1SUPFAM:SSF47336TAIR:AT1G54630
tair10-symbols:ACP3TIGRfam:TIGR00517TIGRFAMs:TIGR00517UniGene:At.20104
UniGene:At.47521UniProt:P25702
Coordinates (TAIR10) chr1:-:20401642..20402919
Molecular Weight (calculated) 14650.70 Da
IEP (calculated) 4.97
GRAVY (calculated) 0.03
Length 136 amino acids
Sequence (TAIR10)
(BLAST)
001: MASIATSAST SLQARPRQLV IGAKQVKSFS YGSRSNLSFN LRQLPTRLTV YCAAKPETVD KVCAVVRKQL SLKEADEITA ATKFAALGAD SLDTVEIVMG
101: LEEEFGIEMA EEKAQSIATV EQAAALIEEL LLEKAK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)