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AT1G54580.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : acyl carrier protein 2
Curator
Summary (TAIR10)
encodes an acyl carrier protein expressed in leaves, roots, and dry seeds. Gene expression is not regulated by light but downregulated by starvation and upregulated by increased level of exogenous sucrose.
Computational
Description (TAIR10)
acyl carrier protein 2 (ACP2); FUNCTIONS IN: acyl carrier activity; INVOLVED IN: fatty acid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Phosphopantetheine-binding (InterPro:IPR006163), Acyl carrier protein (ACP) (InterPro:IPR003231), Acyl carrier protein-like (InterPro:IPR009081), Phosphopantetheine attachment site (InterPro:IPR006162); BEST Arabidopsis thaliana protein match is: acyl carrier protein 3 (TAIR:AT1G54630.1); Has 6585 Blast hits to 6585 proteins in 2202 species: Archae - 0; Bacteria - 4416; Metazoa - 36; Fungi - 108; Plants - 352; Viruses - 2; Other Eukaryotes - 1671 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0236eggNOG:KOG1748EMBL:AC005388EMBL:AY062773
EMBL:AY081661EMBL:CP002684EMBL:X57698EnsemblPlants:AT1G54580
EnsemblPlants:AT1G54580.1entrez:841900Gene3D:1.10.1200.10GeneID:841900
Genevisible:P25701GO:GO:0000036GO:GO:0009507Gramene:AT1G54580.1
HAMAP:MF_01217hmmpanther:PTHR20863hmmpanther:PTHR20863:SF29HOGENOM:HOG000178184
InParanoid:P25701InterPro:IPR003231InterPro:IPR006162InterPro:IPR009081
InterPro:IPR020806iPTMnet:P25701KEGG:ath:AT1G54580OMA:CARGSTF
PaxDb:P25701Pfam:P25701Pfam:PF00550Pfscan:PS50075
PhylomeDB:P25701PIR:H96587PIR:S14964PRIDE:P25701
PRO:PR:P25701ProDom:PD000887PROSITE:PS00012PROSITE:PS50075
ProteinModelPortal:P25701Proteomes:UP000006548RefSeq:NP_175860.1scanprosite:PS00012
SMART:SM00823SMR:P25701STRING:3702.AT1G54580.1SUPFAM:SSF47336
TAIR:AT1G54580tair10-symbols:ACP2TIGRfam:TIGR00517TIGRFAMs:TIGR00517
UniGene:At.47521UniProt:P25701
Coordinates (TAIR10) chr1:+:20389572..20390770
Molecular Weight (calculated) 14528.50 Da
IEP (calculated) 4.97
GRAVY (calculated) 0.08
Length 136 amino acids
Sequence (TAIR10)
(BLAST)
001: MASIAASASI SLQARPRQLA IAASQVKSFS NGRRSSLSFN LRQLPTRLTV SCAAKPETVD KVCAVVRKQL SLKEADEITA ATKFAALGAD SLDTVEIVMG
101: LEEEFGIEMA EEKAQSIATV EQAAALIEEL LFEKAK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)