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AT1G54440.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain; FUNCTIONS IN: 3'-5' exonuclease activity, nucleic acid binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Helicase/RNase D C-terminal, HRDC domain (InterPro:IPR002121), 3'-5' exonuclease (InterPro:IPR002562); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (TAIR:AT5G35910.1); Has 4852 Blast hits to 4794 proteins in 1324 species: Archae - 0; Bacteria - 2587; Metazoa - 382; Fungi - 243; Plants - 209; Viruses - 1; Other Eukaryotes - 1430 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0349eggNOG:KOG2206EMBL:AC005287EMBL:AK226803
EMBL:AK229747EMBL:CP002684EMBL:EU240662EnsemblPlants:AT1G54440
EnsemblPlants:AT1G54440.1entrez:841886ExpressionAtlas:Q0WVE8Gene3D:3.30.420.10
GeneID:841886Genevisible:Q0WVE8GO:GO:0000166GO:GO:0000175
GO:GO:0003676GO:GO:0005634GO:GO:0005654GO:GO:0005730
GO:GO:0080188GO:GO:0090503GO:GO:1902466hmmpanther:PTHR12124
hmmpanther:PTHR12124:SF43HOGENOM:HOG000027797IntAct:Q0WVE8InterPro:IPR002121
InterPro:IPR002562InterPro:IPR010997InterPro:IPR012337PaxDb:Q0WVE8
Pfam:PF00570Pfam:PF01612Pfscan:PS50967PhylomeDB:Q0WVE8
PIR:C96586PRIDE:Q0WVE8PRO:PR:Q0WVE8PROSITE:PS50967
ProteinModelPortal:Q0WVE8Proteomes:UP000006548RefSeq:NP_175846.3SMART:SM00341
SMART:SM00474SMR:Q0WVE8STRING:3702.AT1G54440.1-PSUPFAM:SSF47819
SUPFAM:SSF53098TAIR:AT1G54440UniGene:At.37214UniProt:Q0WVE8
Coordinates (TAIR10) chr1:+:20323284..20327931
Molecular Weight (calculated) 73486.40 Da
IEP (calculated) 5.19
GRAVY (calculated) -0.63
Length 637 amino acids
Sequence (TAIR10)
(BLAST)
001: MRFDDPMDEF KRNRKMEEDS KKVIDVKVAE SDKGFAKFGK AEVPFHIPTL TKPQEEYKIL VDNANNPFEH VLLEKSEDGL RFIHPLEELS VMDFVDRNLS
101: EMRPVKPLPL EETPFKLVEE VKDLEDLAAA LQSVEEFAVD LEHNQYRTFQ GLTCLMQIST RTEDYIVDIF KLWDHIGPYL RELFKDPKKK KVIHGADRDI
201: IWLQRDFGIY VCNLFDTGQA SRVLKLERNS LEFLLKHYCG VAANKEYQKA DWRIRPLPDV MKRYAREDTH YLLYIYDVMR MELHTMAKED EQSDSPLVEV
301: YKRSYDVCMQ LYEKELWTRD SYLHVYGVQT GNLNAVQLSI VAGLCEWRDR IARADDESTG YVLPNKTLFD IAKEMPIVVA QLRRLLKSKL PYLERNFDAV
401: ISVIRRSMQN AAAFEPVVQS LKDRRPETVV EMNIEPKIEK TDTGASASSL SLEKVCVDDS KKQSSGFGVL PLKRKLESDK TVVEKNIEPK IEKTGTEASA
501: SSLSSKKVCV DDSKKQSSGF GVLLSKRKFE SDNKVKEEVK VSKSKPDKVI IVVDDDDDDD DDESYEQSTK AADALDRVSE TPSKGSPSLT QKPKTCNTEV
601: IVLDDDDDSE SREDEDMRRR SEKHRRFMNM KRGFLNI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)