AT4G29750.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : CRS1 / YhbY (CRM) domain-containing protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CRS1 / YhbY (CRM) domain-containing protein; FUNCTIONS IN: RNA binding; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: CRM family member 3A (TAIR:AT3G23070.1); Has 408 Blast hits to 338 proteins in 45 species: Archae - 2; Bacteria - 2; Metazoa - 32; Fungi - 6; Plants - 353; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:14569728..14572962 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 96339.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.34 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.74 | ||||||||||||||||||||||||||||||||||||
| Length | 841 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MALCQFPLNL HTISSSTSSS PRFRRLQPLD TSTKPNFLIR RLRFHSFNHP VRFHTRELSV ITATIDIDTH QRKKTKRKPK PGFFEEISDK WSSRISPKTE 101: KLPWQKQEEQ IQHHEDEEDE EGDESSSNLS SGNGLSDKRT DSNRLYSANE PWSFPRPSGY MSAPWVNNGG SKGVNFTTSS EQGIQSSSFH DVTTVDRYRR 201: DNDSSDRAVD SDLDDGERGM IDSGNNKGIW RTRKSNTVEA ERIVPEHELK RLRNVALRMV ERVKVGSAGI TQALVEAIHE KWEVDEVVKL KFSEPYSLNM 301: KRTHEVLEKK TGGLVIWRSG SSVVLYRGIS YKLKCVQTFI KQNNLEANPE IHRSVEARDY VQEDGNYPKN VPKEQLSELC ELNDLLDEVG PRFHDWTGCA 401: PFPVDADLLP GYVEGYRCPF RILPQGVKPC LSNTEMTEMR RLARTSPPHF ALGRSRELQG LAKAMVKLWA KSAIAKIAIK RGVENTRNER MAEELKRLTR 501: GVLVSRNKEY IVFYRGNDFM PPAVAEALTE RQKEITEVLQ AKEDQAREMA STRATLTSQA KSPKTQLLAG TLAETIAASS RWAPNASSVD IEELKRESAS 601: IKRAALIRDL ELRLLYGKQK LRRAERDLAK VQKDLDPSEL PTDSEIITEE ERLLYRKIGL SMDPFLLLGR REVYDGTIEN MHLHWKHREL VKVIVRGKSL 701: PQVKHIAISL EAESGGVLVS VDKTMKGYAI ILYRGKNYQM PFRLRPSNLL TRKKAFARSI ELQRREALKY HVADLEERIE LLKTGQDDDM ETRNKSDEEE 801: ENLYLRVDES DFSSDEDESL EWESEKNETF LSSEGKEEEE A |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)