AT1G54385.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : ARM repeat superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: spliceosome assembly, nuclear mRNA splicing, via spliceosome; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024), Survival motor neuron interacting protein 1 (InterPro:IPR007022); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT3G03970.2); Has 116 Blast hits to 114 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 116; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:20301289..20303048 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 62156.50 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.08 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||||||||||||||
| Length | 560 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGLNLNPILR QELANLDKDT ESRKSAMKAL KSYVKDLDSK AIPGFLAQVF ETKETNSLSG EYTISLYEIL ARVHGPNIVP QIDTIMSTIV KTLASSAGSF 101: PLQQACSKVI PAIARYGIDP TTTEDKKRVI IHSLCKPLTD SLLASQESLT SGAALCLKAL VDSDNWRFAS DEMVNRVCQN VVVALDSNSN QTHLQMGLVM 201: SLAKHNPLIV EAYARLLIHT GLRILGFGVS EGNSQKRLSA VQMLNFLMKC LDPRSIYSEV ELIIKEMERC QSDQMAYVRG AAYEAMMTSK RIAAELESKM 301: EKGCRSVTGS NFSRRNCSSI VPDYSLSPES QTLGSFSGYD SPVESSPISH TSCNSEFDRR SVNRKLWRRD ENGGVVDISL KDGLFSRVTK GSTTVSDSPL 401: VPYDTCENGD EFEGFLMESL RNTTPSPQRQ RSRRINAEDF NIFSTPRKLI SSLQYPDDVD LDHSDIQSPI LRGEREKTIG SRKNPKLRKQ FPTMVETMSS 501: TITVSEDTAQ TQMITGKKKK KKMSYAKLVI AISFVVVALF ATVILMVNQD DDVGYYTVPT |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)