AT1G53800.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.954 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53250.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:20081888..20084320 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 64416.40 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 10.41 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.91 | ||||||||||||||||||||||||||||
| Length | 572 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPSLGTFSDI ATIQPSFQAH LVPLGAQSII HAKSLPNPWR QSCFSKNLKF YTGHSHVRRG KVLITAVATL ETKYPAQKEN ERSSSLSSAS SKSSNGSADD 101: GEEQVDDREK LRRMRISKAN RGNTPWNKGR KHSPETLQKI RERTKIAMQD PKIKMKLANL GHAQNKETRM KIGEGVRMRW ARRKERRKVQ ETCHFEWQNL 201: LAEAAKQGYT DEEELQWDSY NILDQQNQLE WLESVEQRKA IKGAKSNRRA PKSPEQRRRI AEAIAAKWAD PSYRERVCSG LAKYHGIPVG VERRRRRPRS 301: DAEPRKKTPT KKSTRDSEFE RQSQVQVVKV RKRKTPAYKD PLASSKLEMI KSIRAKRVAE ESKKMDAVER ARLLISEAEK AAKVLEIAAL KSPVAQASLL 401: ESKKLIAEAT QLIKSLEMRQ IASDEDGTYP FLLSPQPNDS ESETKDTNDQ ERPGEINGTH TLQINGESLH MNMRSNDLPT FVIEGTTNQF VSDMESNTSQ 501: GGREDIKLGI VGQPNGTRVH PPAESNGAIS LAENHPLPNG YHGIDEKAAS LESGNVTKKW VRGRLVEVTE AA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)