AT1G53470.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : mechanosensitive channel of small conductance-like 4 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
mechanosensitive channel of small conductance-like 4 (MSL4); INVOLVED IN: transmembrane transport; LOCATED IN: plasma membrane, membrane; CONTAINS InterPro DOMAIN/s: Membrane protein, At2g17000, predicted (InterPro:IPR016688), Mechanosensitive ion channel MscS (InterPro:IPR006685), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: mechanosensitive channel of small conductance-like 5 (TAIR:AT3G14810.1); Has 3267 Blast hits to 3247 proteins in 1053 species: Archae - 163; Bacteria - 2328; Metazoa - 1; Fungi - 210; Plants - 229; Viruses - 0; Other Eukaryotes - 336 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:19958587..19961578 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 100421.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.70 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 881 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAVDSTDQRR DFVVRIDGED NGDSEKFWRE SSINFWHNDK SSKPPGGEED DGSFDFMRRS SEKSEEPDPP SKLINQFLNK QKASGDEISL DMEANMPELQ 101: KNTVPPLSST AVSGSASPVT APVTASYRNG TGDAIRRRQN RVTLSPSVKD GDSSEDEENR VDGSEVVKCT SNRSTMRTKT LMKMKTRSRL MDPPTPTYPD 201: MVSGRTPRSG NLNPGFSGRN TKPGTPNQGG SKDLEEEEDP FSEEDLPEGL RKEKICVWVI IEWIFLILII ASLICSLVIP YLRGKTLWDL ALWKWEVMVL 301: VLICGRLVSS WIVKLFVYFV ESNFLWRKKV LYFVYGIRKP VQNCLWLGLV LIAWHFLFDK KVEREMRSTV LKYVTKVLIC LLVAVIIWLI KTLLVKVLAS 401: SFHMSTYFDR IQESLFTQYV IETLSGPPRI EIHIEEEKVA NDVKTFEIVG RKLSPLGPKA VSSPPQVTVG SGRLQKSPSR VGKSPVLSRS GSKKEGGEEG 501: IRIDHLQRMN TKNVSAWKMK KLMNVIKKGT LSTLDEQIQD TTTQEDDKAT QIRSEFEAKL AARKIFQNVA EPGSRYIYME DFMRFLSEDE SERAMDLFEG 601: ASECHKISKS CLKNWVVNAF RERRALALTL NDTKTAVNRL HRIVDVLVSI VILIIWLLIL GIATTKFLLV ISSQLLLVVF VFGNSCKTIF EAVIFVFVMH 701: PFDVGDRCEI DGVQMIVEEM NILTTVFLRF DNQKIVYPNS LLGTKPIANY YRSPDMQDAI EFFVHIATPP EKTTALRQRI LSYVDNKKDH WHPSPMIVFR 801: DMCGLNSVKI AMWPTHKMNH QNMGERYVRR GQLLEEIGRL CRELDIEYRL YPLNINVKSL PAATPITSDR IPPSWNQQRS V |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)