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AT1G52100.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.842
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:25641898 (2015): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Mannose-binding lectin superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Mannose-binding lectin superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: shoot, cotyledon, hypocotyl, leaf; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: Mannose-binding lectin superfamily protein (TAIR:AT5G35940.1); Has 1742 Blast hits to 773 proteins in 43 species: Archae - 0; Bacteria - 7; Metazoa - 0; Fungi - 4; Plants - 1729; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
BioGrid:26865eggNOG:ENOG410IJZZeggNOG:ENOG4111KSNEMBL:AC006216
EMBL:AK229056EMBL:BT015734EMBL:BT020176EMBL:CP002684
EnsemblPlants:AT1G52100EnsemblPlants:AT1G52100.1EnsemblPlants:AT1G52100.2entrez:841640
ExpressionAtlas:Q5XF82Gene3D:2.100.10.30GeneID:841640Genevisible:Q5XF82
GO:GO:0030246Gramene:AT1G52100.2hmmpanther:PTHR23244hmmpanther:PTHR23244:SF208
HOGENOM:HOG000015149IntAct:Q5XF82InterPro:IPR001229KEGG:ath:AT1G52100
OMA:ITAVEGCPaxDb:Q5XF82Pfam:PF01419Pfscan:PS51752
PIR:H96560PRIDE:Q5XF82PRO:PR:Q5XF82PROSITE:PS51752
ProteinModelPortal:Q5XF82Proteomes:UP000006548RefSeq:NP_001185202.1RefSeq:NP_175622.3
SMART:SM00915SMR:Q5XF82SUPFAM:SSF51101TAIR:AT1G52100
UniGene:At.37669UniProt:F4IB98UniProt:Q5XF82UniProt:Q9ZU16
Coordinates (TAIR10) chr1:-:19383291..19385123
Molecular Weight (calculated) 47660.40 Da
IEP (calculated) 7.72
GRAVY (calculated) -0.34
Length 437 amino acids
Sequence (TAIR10)
(BLAST)
001: MALKVEAKGG KVGIQWDDGS DYHDVTKIYV RGGLEGIQFI KFEYVKAGKK VIGPIHGASG RGFTETFEIN NLEKEYLLSI EGYYNASTGV IQCLQFITNK
101: KTYDPIGYNE GARFTLSASR SKIIGFHGFA DKYLNSLGAY FIKIPSIQSA IEGAKTTGKG FDDGGDYDGI RKVYVTTDGS AIRHVRFDYD KAGQVETRER
201: GAKTGTQHEF TVNHPYEYIT SVEGTYAHTQ PYNCVVLTSL TFKTSKGRAS PAIGKVTGSK FKLERQGDAI VGFHGRVGSC IDGIGVYYAP LPPSPPPPEK
301: LQGQGGDGGD SWDDGAFKNV KKIYVGQGDV GIAAVKFEYE TYTSEVILAE RHGKETLLGY EDEYITAVEG CHDKVIGSET GVITMLRFKT NKRNSPPFGL
401: ESAFSFILEK DGHKIVGFHG KASTLLHQIG VHVTAIA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)