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AT1G48380.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : root hair initiation protein root hairless 1 (RHL1)
Curator
Summary (TAIR10)
Encodes a novel nuclear protein required for root hair initiation and ploidy-dependent cell growth. Its sequence has similarity to the C-terminal domain of mammalian DNA topo IIalpha. Shows in vitro DNA binding activity and is likely to be part of the topo VI complex by binding to subunit A.
Computational
Description (TAIR10)
ROOT HAIRLESS 1 (RHL1); FUNCTIONS IN: protein binding, DNA binding; INVOLVED IN: root hair initiation, DNA endoreduplication; LOCATED IN: nucleolus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; Has 191 Blast hits to 179 proteins in 66 species: Archae - 0; Bacteria - 2; Metazoa - 46; Fungi - 37; Plants - 69; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).
Protein Annotations
EMBL:AC007932EMBL:AF062371EMBL:AF062372EMBL:AY057707
EMBL:AY133623EMBL:CP002684EnsemblPlants:AT1G48380EnsemblPlants:AT1G48380.1
entrez:841258GeneID:841258Genevisible:O81242GO:GO:0003677
GO:GO:0005634GO:GO:0005730GO:GO:0042023GO:GO:0048766
hmmpanther:PTHR35698hmmpanther:PTHR35698:SF1HOGENOM:HOG000064598InParanoid:O81242
IntAct:O81242KEGG:ath:AT1G48380OMA:EEKKRCTPfam:O81242
PhylomeDB:O81242PIR:T52177PRIDE:O81242PRO:PR:O81242
Proteomes:UP000006548RefSeq:NP_001117449.1RefSeq:NP_564526.1TAIR:AT1G48380
tair10-symbols:HYP7tair10-symbols:RHL1TMHMM:TMhelixUniGene:At.10666
UniGene:At.15425UniProt:O81242
Coordinates (TAIR10) chr1:-:17877637..17879203
Molecular Weight (calculated) 38906.40 Da
IEP (calculated) 7.60
GRAVY (calculated) -0.84
Length 355 amino acids
Sequence (TAIR10)
(BLAST)
001: MVRASSSKKG GSKGGDKDDA ESKQRKRLKT LALDNQLLSD SPAKSHSSLK PSKQVLKHHG TDIIRKSQRK NRFLFSFPGL LAPISAATIG DLDRLSTKNP
101: VLYLNFPQGR MKLFGTILYP KNRYLTLQFS RGGKNVLCDD YFDNMIVFSE SWWIGTKEEN PEEARLDFPK ELAQAENTEF DFQGGAGGAA SVKKLASPEI
201: GSQPTETDSP EVDNEDVLSE DGEFLDDKIQ VTPPVQLTPP VQVTPVRQSQ RNSGKKFNFA ETSSEASSGE SEGNTSDEDE KPLLEPESST RSREESQDGN
301: GITASASKLP EELPAKREKL KSKDSKLVQA TLSNLFKKAE EKTAGTSKAK SSSKA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)