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AT1G48280.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : hydroxyproline-rich glycoprotein family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
hydroxyproline-rich glycoprotein family protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Hydroxyproline-rich glycoprotein family protein (TAIR:AT3G25690.3); Has 10788 Blast hits to 7587 proteins in 614 species: Archae - 16; Bacteria - 992; Metazoa - 4057; Fungi - 1231; Plants - 2229; Viruses - 567; Other Eukaryotes - 1696 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IDXAeggNOG:ENOG410YDG8EMBL:AC007932EMBL:CP002684
EnsemblPlants:AT1G48280EnsemblPlants:AT1G48280.1entrez:841248GeneID:841248
Gramene:AT1G48280.1hmmpanther:PTHR31342hmmpanther:PTHR31342:SF12HOGENOM:HOG000153560
KEGG:ath:AT1G48280ncoils:CoilOMA:FINDLIQPhylomeDB:Q9SX62
PIR:G96522Proteomes:UP000006548RefSeq:NP_564524.1STRING:3702.AT1G48280.1
SUPFAM:SSF101447TAIR:AT1G48280UniGene:At.26293UniProt:Q9SX62
Coordinates (TAIR10) chr1:+:17835196..17837553
Molecular Weight (calculated) 62477.90 Da
IEP (calculated) 10.33
GRAVY (calculated) -0.69
Length 558 amino acids
Sequence (TAIR10)
(BLAST)
001: MSRISTTSTT PSRVRAANSH YSVISKPRAQ DDNGLTGGKP KSSGYDVKND PAKRRSILLK RAKSAEEEMA VLAPQRARSV NRPAVVEQFG CPRRPISRKS
101: EETVMATAAA EDEKRKRMEE LEEKLVVNES LIKDLQLQVL NLKTELEEAR NSNVELELNN RKLSQDLVSA EAKISSLSSN DKPAKEHQNS RFKDIQRLIA
201: SKLEQPKVKK EVAVESSRLS PPSPSPSRLP PTPPLPKFLV SPASSLGKRD ENSSPFAPPT PPPPPPPPPP RPLAKAARAQ KSPPVSQLFQ LLNKQDNSRN
301: LSQSVNGNKS QVNSAHNSIV GEIQNRSAHL IAIKADIETK GEFINDLIQK VLTTCFSDME DVMKFVDWLD KELATLADER AVLKHFKWPE KKADTLQEAA
401: VEYRELKKLE KELSSYSDDP NIHYGVALKK MANLLDKSEQ RIRRLVRLRG SSMRSYQDFK IPVEWMLDSG MICKIKRASI KLAKTYMNRV ANELQSARNL
501: DRESTKEALL LQGVRFAYRT HQFAGGLDPE TLCALEEIKQ RVPSHLRLAR GNMAGNLS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)