AT1G47980.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.479 plasma membrane 0.423 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G62730.1); Has 169 Blast hits to 169 proteins in 41 species: Archae - 0; Bacteria - 68; Metazoa - 0; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:17691985..17693818 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 34295.70 Da | ||||||||||||||||||||||||
| IEP (calculated) | 8.94 | ||||||||||||||||||||||||
| GRAVY (calculated) | 0.09 | ||||||||||||||||||||||||
| Length | 315 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MALTKERRSL LVSMVLVFFF FNFHHLQVTS CPDQATTNCT DQDRKLLEFP LNLEYLEAEF FLFGALGLGL DKVAPNLTMG GPSPIGAQKA NLDPLTRDII 101: LQFAWQEVGH LRAIKKTVKG FARPQLDLSK KAFAKVMDKA FGVKFVPPFN PYANSYNYLI ASYLVPYVGL TGYVGANPKL QCPASRKLVA GLLGVESGQD 201: AVIRGMLYAR AAHIVYPYGV TVAAFTDKIS DLRNKLGKAG VKDEGLIVPK FMGAEGQVIG NVLVGNELSL SFDRTPEEIL RIVYGSGNES VPGGFYPKGA 301: DGEIAKSYLV TVGSE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)