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AT1G43900.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.664
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein phosphatase 2C family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: HOPW1-1-interacting 2 (TAIR:AT4G31750.1); Has 8097 Blast hits to 7992 proteins in 953 species: Archae - 12; Bacteria - 1506; Metazoa - 1655; Fungi - 811; Plants - 2687; Viruses - 9; Other Eukaryotes - 1417 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G43900-MONOMERBioGrid:26214EC:3.1.3.16eggNOG:COG0631
eggNOG:KOG0698EMBL:AC006423EMBL:AC022314EMBL:AY063973
EMBL:AY117193EMBL:CP002684EnsemblPlants:AT1G43900EnsemblPlants:AT1G43900.1
entrez:840989Gene3D:3.60.40.10GeneID:840989Genevisible:Q8VZN9
GO:GO:0004722GO:GO:0016021GO:GO:0046872Gramene:AT1G43900.1
hmmpanther:PTHR13832hmmpanther:PTHR13832:SF311HOGENOM:HOG000233896InParanoid:Q8VZN9
IntAct:Q8VZN9InterPro:IPR000222InterPro:IPR001932InterPro:IPR015655
KEGG:ath:AT1G43900KO:K17506MINT:MINT-8390558OMA:DYFETRI
PANTHER:PTHR13832PaxDb:Q8VZN9Pfam:PF00481Pfam:Q8VZN9
Pfscan:PS51746PhylomeDB:Q8VZN9PRIDE:Q8VZN9PRO:PR:Q8VZN9
PROSITE:PS01032PROSITE:PS51746ProteinModelPortal:Q8VZN9Proteomes:UP000006548
RefSeq:NP_175057.2scanprosite:PS01032SMART:SM00332SMR:Q8VZN9
STRING:3702.AT1G43900.1SUPFAM:SSF81606TAIR:AT1G43900TMHMM:TMhelix
UniGene:At.28764UniGene:At.48277UniProt:Q8VZN9
Coordinates (TAIR10) chr1:+:16654045..16655810
Molecular Weight (calculated) 40585.00 Da
IEP (calculated) 5.49
GRAVY (calculated) -0.11
Length 371 amino acids
Sequence (TAIR10)
(BLAST)
001: MKKTRNVASS PIECVHLQTK PTTTLVRSFF FFLFNSQTIS SFIIFYLFLC SFFWFCQSPN LTNPSPPPLS VAPLRGDANS PPPESSSSPA TKSSLMISSR
101: DPNALFSGGG ISFLAGVRTV KFSYGYSSLK GKRATMEDYF ETRISDVNGQ MVAFFGVFDG HGGARTAEYL KNNLFKNLVS HDDFISDTKK AIVEVFKQTD
201: EEYLIEEAGQ PKNAGSTAAT AFLIGDKLIV ANVGDSRVVA SRNGSAVPLS DDHKPDRSDE RQRIEDAGGF IIWAGTWRVG GILAVSRAFG DKQLKPYVIA
301: EPEIQEEDIS TLEFIVVASD GLWNVLSNKD AVAIVRDISD AETAARKLVQ EGYARGSCDN ITCIVVRFEV S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)