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AT1G35230.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : arabinogalactan protein 5
Curator
Summary (TAIR10)
Encodes arabinogalactan-protein (AGP5).
Computational
Description (TAIR10)
arabinogalactan protein 5 (AGP5); BEST Arabidopsis thaliana protein match is: arabinogalactan protein 10 (TAIR:AT4G09030.1); Has 52009 Blast hits to 24079 proteins in 1500 species: Archae - 200; Bacteria - 14022; Metazoa - 11286; Fungi - 4612; Plants - 7669; Viruses - 1962; Other Eukaryotes - 12258 (source: NCBI BLink).
Protein Annotations
BioGrid:25644EMBL:AC069160EMBL:AF082302EMBL:AK117995
EMBL:AY086648EMBL:BT004723EMBL:CP002684EnsemblPlants:AT1G35230
EnsemblPlants:AT1G35230.1entrez:840412GeneID:840412Genevisible:Q8LCE4
GO:GO:0005886GO:GO:0031225Gramene:AT1G35230.1hmmpanther:PTHR36321
hmmpanther:PTHR36321:SF1HOGENOM:HOG000033851IntAct:Q8LCE4KEGG:ath:AT1G35230
OMA:ANKSMVFPaxDb:Q8LCE4Pfam:Q8LCE4PIR:C86473
PRO:PR:Q8LCE4ProteinModelPortal:Q8LCE4Proteomes:UP000006548RefSeq:NP_564455.1
STRING:3702.AT1G35230.1TAIR:AT1G35230tair10-symbols:AGP5TMHMM:TMhelix
UniGene:At.25010UniProt:Q8LCE4
Coordinates (TAIR10) chr1:+:12917184..12917585
Molecular Weight (calculated) 12597.90 Da
IEP (calculated) 9.69
GRAVY (calculated) 0.25
Length 133 amino acids
Sequence (TAIR10)
(BLAST)
001: MASKSVVVFL FLALVASSVV AQAPGPAPTI SPLPATPTPS QSPRATAPAP SPSANPPPSA PTTAPPVSQP PTESPPAPPT STSPSGAPGT NVPSGEAGPA
101: QSPLSGSPNA AAVSRVSLVG TFAGVAVIAA LLL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)