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AT1G34380.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 5'-3' exonuclease family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
5'-3' exonuclease family protein; FUNCTIONS IN: 5'-3' exonuclease activity, DNA binding, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 5'-3' exonuclease, N-terminal resolvase-like domain (InterPro:IPR020046); BEST Arabidopsis thaliana protein match is: 5'-3' exonuclease family protein (TAIR:AT3G52050.5); Has 7465 Blast hits to 7465 proteins in 2316 species: Archae - 0; Bacteria - 5303; Metazoa - 1; Fungi - 0; Plants - 91; Viruses - 21; Other Eukaryotes - 2049 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0258eggNOG:ENOG410IK6UEMBL:CP002684EnsemblPlants:AT1G34380
EnsemblPlants:AT1G34380.1entrez:840340ExpressionAtlas:B3H623Gene3D:3.40.50.1010
GeneID:840340GO:GO:0003677GO:GO:0004527Gramene:AT1G34380.1
hmmpanther:PTHR10133hmmpanther:PTHR10133:SF38HOGENOM:HOG000006229InterPro:IPR002421
InterPro:IPR020046InterPro:IPR029060PaxDb:B3H623Pfam:PF02739
PhylomeDB:B3H623PRIDE:B3H623ProteinModelPortal:B3H623Proteomes:UP000006548
RefSeq:NP_174698.2SMART:SM00475SMR:B3H623STRING:3702.AT1G34380.2
SUPFAM:SSF88723TAIR:AT1G34380UniGene:At.39746UniGene:At.64018
UniProt:B3H623
Coordinates (TAIR10) chr1:-:12553297..12554299
Molecular Weight (calculated) 30136.90 Da
IEP (calculated) 9.24
GRAVY (calculated) -0.41
Length 264 amino acids
Sequence (TAIR10)
(BLAST)
001: MITVGFIQPN SLFSFSTKSI DKTQPSRTKW VSSSSSSFSS HSSVETFHRT GNVQVLQKDV LCGNNEEIRK KNKRVFFLDV SPLCYEGNKP SSQAFGHWIS
101: LFFSQVSLTD PVIAVIDGEE GNQRRRELLP SYKAHRKSPN HGRYSKRPHQ FVDEVLRKCN VPVVRIEGHE ADDVVATLME QAVQRGYRAV IASPDKDFKQ
201: LISENVQIVI PLADLRRWSF YTLKHYHAQY NCDPQSDLSF RKCLNRLMAT NMSLDACLSV NFLC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)