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AT1G31885.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.923
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NOD26-like intrinsic protein 3;1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NOD26-like intrinsic protein 3;1 (NIP3;1); FUNCTIONS IN: transporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: NOD26-like intrinsic protein 1;2 (TAIR:AT4G18910.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0580eggNOG:KOG0223EMBL:AC079041EMBL:CP002684
EnsemblPlants:AT1G31885EnsemblPlants:AT1G31885.1entrez:840079Gene3D:1.20.1080.10
GeneID:840079Genevisible:Q9C6T0GO:GO:0006833GO:GO:0015250
GO:GO:0015254GO:GO:0015793GO:GO:0016021GO:GO:0034220
Gramene:AT1G31885.1hmmpanther:PTHR19139hmmpanther:PTHR19139:SF144HOGENOM:HOG000288286
InParanoid:Q9C6T0InterPro:IPR000425InterPro:IPR022357InterPro:IPR023271
KEGG:ath:AT1G31885KO:K09874OMA:MEFIATFPANTHER:PTHR19139
PaxDb:Q9C6T0Pfam:PF00230Pfam:Q9C6T0PhylomeDB:Q9C6T0
PIR:B86443PRIDE:Q9C6T0PRINTS:PR00783PRO:PR:Q9C6T0
PROSITE:PS00221ProteinModelPortal:Q9C6T0Proteomes:UP000006548RefSeq:NP_174472.2
scanprosite:PS00221SMR:Q9C6T0STRING:3702.AT1G31885.1SUPFAM:SSF81338
TAIR:AT1G31885tair10-symbols:NIP3;1TIGRfam:TIGR00861TIGRFAMs:TIGR00861
TMHMM:TMhelixUniGene:At.51865UniProt:Q9C6T0
Coordinates (TAIR10) chr1:+:11450460..11451985
Molecular Weight (calculated) 34580.70 Da
IEP (calculated) 5.72
GRAVY (calculated) 0.40
Length 323 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEISDITTQ TQTVVLDIEN YQSIDDSRSS DLSAPLVSVS FVQKLIGEFV GTFTMIFAGC SAIVVNETYG KPVTLPGIAL VWGLVVTVMI YSIGHVSGAH
101: FNPAVSIAFA SSKKFPFNQV PGYIAAQLLG STLAAAVLRL VFHLDDDVCS LKGDVYVGTY PSNSNTTSFV MEFIATFNLM FVISAVATDK RATGSFAGIA
201: IGATIVLDIL FSGPISGASM NPARSLGPAL IWGCYKDLWL YIVSPVIGAL SGAWTYGLLR STKKSYSEII RPNCNKVSSR DRQEASQDEI CVLRVVDPAN
301: QNYFICSSPT DINGKCNVTC KLA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)