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AT1G30475.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.704
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BEST Arabidopsis thaliana protein match is: embryo defective 1303 (TAIR:AT1G56200.1); Has 148 Blast hits to 148 proteins in 34 species: Archae - 0; Bacteria - 14; Metazoa - 63; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J293eggNOG:ENOG410YTH6EMBL:AK317355EMBL:CP002684
EnsemblPlants:AT1G30475EnsemblPlants:AT1G30475.1entrez:2745766ExpressionAtlas:A8MQH6
GeneID:2745766Gramene:AT1G30475.1hmmpanther:PTHR34938hmmpanther:PTHR34938:SF1
HOGENOM:HOG000015114OMA:GEHENNHPhylomeDB:A8MQH6Proteomes:UP000006548
RefSeq:NP_973941.2STRING:3702.AT1G30475.1TAIR:AT1G30475UniGene:At.20697
UniGene:At.43735UniGene:At.66880UniGene:At.68824UniGene:At.75631
UniProt:A8MQH6
Coordinates (TAIR10) chr1:-:10788501..10789943
Molecular Weight (calculated) 20412.30 Da
IEP (calculated) 10.34
GRAVY (calculated) -0.51
Length 191 amino acids
Sequence (TAIR10)
(BLAST)
001: MIEKLRGATK IPNFSSTKNL PALIQISMVM PVMNPSLCIG TQTSVYLAPR EKSFTSNGNS QRRYPTSVSM QRQPWSQSKF PSLQDAVQPV VVSKNKRPVF
101: ACNSALNSKC SQGQTQTVTR QSPTITQAPT HGKVKSPKLD DGGNGFPPRD DGGGGGGGGG GGSSSGGFFL FGFLLFMGYL KDLEGEHENN H
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)