suba logo
AT1G30450.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
golgi 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25122472 (2014): Golgi Golgi apparatus
  • PMID:24344820 (2014): Golgi trans-Golgi network
  • PMID:22923678 (2012): Golgi
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
  • PMID:18686298 (2008): plant-type vacuole plant-type vacuole membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : cation-chloride co-transporter 1
Curator
Summary (TAIR10)
member of Cation-chloride co-transporter family
Computational
Description (TAIR10)
cation-chloride co-transporter 1 (CCC1); FUNCTIONS IN: sodium:potassium:chloride symporter activity, cation:chloride symporter activity; INVOLVED IN: transport, chloride transport, cation transport, sodium ion transport, transmembrane transport; LOCATED IN: plasma membrane; EXPRESSED IN: root vascular system, root tip, cultured cell; CONTAINS InterPro DOMAIN/s: Amino acid permease domain (InterPro:IPR004841), Na/K/Cl co-transporter superfamily (InterPro:IPR004842); Has 4233 Blast hits to 3854 proteins in 900 species: Archae - 104; Bacteria - 2028; Metazoa - 1538; Fungi - 159; Plants - 142; Viruses - 0; Other Eukaryotes - 262 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0531eggNOG:KOG2082EMBL:AC009917EMBL:AK226602
EMBL:AM113986EMBL:CP002684EnsemblPlants:AT1G30450EnsemblPlants:AT1G30450.1
EnsemblPlants:AT1G30450.2EnsemblPlants:AT1G30450.3entrez:839924GeneID:839924
GO:GO:0005768GO:GO:0005794GO:GO:0005802GO:GO:0005886
GO:GO:0006814GO:GO:0006821GO:GO:0008511GO:GO:0015379
GO:GO:0016021GO:GO:0022820GO:GO:0071805GO:GO:1902476
Gramene:AT1G30450.1Gramene:AT1G30450.2Gramene:AT1G30450.3hmmpanther:PTHR11827
hmmpanther:PTHR11827:SF68HOGENOM:HOG000092644InParanoid:Q2UVJ5InterPro:IPR004841
InterPro:IPR004842InterPro:IPR018491iPTMnet:Q2UVJ5KEGG:ath:AT1G30450
OMA:DPRSWKTPaxDb:Q2UVJ5Pfam:PF00324Pfam:PF03522
Pfam:Q2UVJ5PhylomeDB:Q2UVJ5PIR:H86428PRIDE:Q2UVJ5
PRO:PR:Q2UVJ5ProteinModelPortal:Q2UVJ5Proteomes:UP000006548Reactome:R-ATH-426117
RefSeq:NP_174333.2RefSeq:NP_849731.1RefSeq:NP_849732.1STRING:3702.AT1G30450.1
TAIR:AT1G30450tair10-symbols:ATCCC1tair10-symbols:CCC1tair10-symbols:HAP5
TIGRfam:TIGR00930TIGRFAMs:TIGR00930TMHMM:TMhelixUniGene:At.40549
UniProt:Q2UVJ5
Coordinates (TAIR10) chr1:+:10762905..10769061
Molecular Weight (calculated) 106654.00 Da
IEP (calculated) 6.45
GRAVY (calculated) 0.27
Length 975 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSGDIEEAG GNGEEEFRSG PRLGGSKYRP VVAHDRAVVE MSSIDPGSSS STLKNIKVVA PGDVGAGVRG PEDGVNGHQK ESKLELFGFD SLVNILGLKS
101: MTGEQIQAPS SPRDGEDISI TQGHPKPPAL KMGTMMGVFV PCLQNILGII YYIRFTWIVG MAGIGQGLVL VFLCGLCTFL TTISLSAIAT NGAMKGGGPY
201: YLIGRALGPE VGISIGLCFF LGNAVAGALY VLGAVETFLK AFPAAGIFRE TITKVNGTAV SESIQSPNSH DLQVYGIVVT ILLCFIVFGG VKMINRVAPA
301: FLVPVLLSIF CIFIGIFLAK TDDPDNGITG LRLKSFKDNW GSAYQMTNDA GIPDPTGGTY WSFNELVGLF FPAVTGIMAG SNRSASLKDT QKSIPVGTLA
401: ATLTTTSLYL ISVLFFGAVA TRDKLLTDRL LTATIAWPFP AIVHVGIILS TLGAALQSLT GAPRLLAAIA NDDILPILNY FKVADTSEPH IATLFTAFIC
501: IGCVVIGNLD LITPTVTMFY LLCYSGVNLS CFLLDLLDAP SWRPRWKYHH WSLSFVGASL CIVIMFLISW SFTVVAIALA SLIYKYVGLK GKAGDWGDGF
601: KSAYFQLALR SLRSLGANQV HPKNWYPIPL VFCRPWGQLP ENVPCHPKLA DFANCMKKKG RGMSIFVSIL DGDYYECAEE AKEACKQLAT YIEYKRCEGV
701: AEIVVAPNMT EGFRGIIQTM GLGNLKPNIV VMRYPEIWRR ENLTEIPSTF VGIINDCITA NKAVVIIKGL DEWPNEYQRQ YGTIDLYWIV RDGGLMLLLS
801: QLLLTKESFE SCKIQLFCIA EEDSDAEALK ADVKKFLYDL RMHAEVIVVT MKSWDIRSEG NSQEDSLEAF DAAQRRISDY LGEIKRQGSN PLLANGKPMV
901: VNEQQVEKFL YTMLKLNSTI LSYSRMAAVV LVSLPPPPLN HPAYFYMEYM DLLVENVPRM LIVRGYHRDV VTLFT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)