AT1G28350.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Nucleotidylyl transferase superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Nucleotidylyl transferase superfamily protein; FUNCTIONS IN: tyrosine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: translation, tyrosyl-tRNA aminoacylation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Tyrosyl-tRNA synthetase, class Ib, archaeal/eukaryotic cytosolic (InterPro:IPR015624), Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial (InterPro:IPR002307), Aminoacyl-tRNA synthetase, class Ib (InterPro:IPR002305); BEST Arabidopsis thaliana protein match is: Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial (TAIR:AT2G33840.1); Has 6761 Blast hits to 4745 proteins in 1539 species: Archae - 718; Bacteria - 3084; Metazoa - 577; Fungi - 521; Plants - 241; Viruses - 10; Other Eukaryotes - 1610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:9944483..9949577 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 84722.10 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.57 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.41 | ||||||||||||||||||||||||||||||||||||||||
| Length | 748 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEALSINAPT QASTLPSGLQ ISKEVEKRYN VVRSVGEQCI HDDELKDLLA KKAAPVCYDG FEPSGRMHIA QGLMKIMNVN KLTSAGCRVK IWIADWFAYM 101: NNKLGGDLKK IRVVGEYFKE IFQAAGMNSE NVEFLWSSDE INAKGDEYWP LVMDIACRNS LAQIKRCMPI MGLSENEELS AAHILYVCMQ CADTFFLEAD 201: ICQLGMDQQT VNLLARDYCD VVKRENKPVI LSHHMLPGLQ QGQKKMSKSD PSSAIFMEDE EAEVNVKIKK AYCPPDIVEG NPCLEYVKHI ILPWFSEFTV 301: ERDEKYGGNR TFKSFEDITT DYESGQLHPK DLKDALSKAL NKILQPVRDH FKTNSRAKNL LKQVKGYKVT RVIPTASSTK EEDLSINTSA SSSAAGLQMS 401: EEAEMKYKIV RSIGEECIQE DELKNLLAKK PAPICYDGFE PSGRMHIAQG VMKVTNVNKL TSAGCQVKIW IADWFAQLNN KLGGDLERIR VVGEYFKEIW 501: QAGGMNNDKV EFLWASDEIN GKGSKYWPLV MDIARRNNLR RILRCGQIMG RSETEVLSAA QILYPCMQCA DIFLLEADIC QLGMDQRKVN MLAREYCADI 601: KRKNKPIILS HHMLPGLQQG QEKMSKSDPS SAIFMEDEEA DVNEKISKAY CPPKTVEGNP CLEYVKYIVL PRFNEFKVES EKNGGNKTFN SFEDIVADYE 701: TGELHPEDLK KALMKALNIT LQPVRDHFKT NERAKNLLEQ VKAFRVTR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)