suba logo
AT1G26470.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, H4/H2A histone acetyltransferase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CT20 (InterPro:IPR012423); Has 60 Blast hits to 60 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 26; Fungi - 2; Plants - 30; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYWYeggNOG:ENOG4112A56EMBL:AC013427EMBL:AY150388
EMBL:CP002684EnsemblPlants:AT1G26470EnsemblPlants:AT1G26470.1entrez:839188
GeneID:839188GO:GO:0006357GO:GO:0016573GO:GO:0035267
Gramene:AT1G26470.1hmmpanther:PTHR13581InterPro:IPR012423KEGG:ath:AT1G26470
OMA:RFYNIEMPfam:PF07904PhylomeDB:Q9FZD2PIR:E86391
PRO:PR:Q9FZD2Proteomes:UP000006548RefSeq:NP_564248.1STRING:3702.AT1G26470.1
TAIR:AT1G26470UniGene:At.15966UniProt:Q9FZD2
Coordinates (TAIR10) chr1:+:9155134..9156036
Molecular Weight (calculated) 15209.80 Da
IEP (calculated) 4.22
GRAVY (calculated) -0.64
Length 133 amino acids
Sequence (TAIR10)
(BLAST)
001: MGGRTDESGG GGKEKEEEQD GLSVHSPCKA LPSSASSLSK EQSQVELELR LLEALEIYPP VKLRGIHRHF VLYGLMEYLG RSFDRPFTAD EVLQLLDRFY
101: NIEMLKSDDE DIDILNHEED FTLPQSFFDK EEE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)