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AT4G24440.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S); FUNCTIONS IN: RNA polymerase II transcription factor activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter; LOCATED IN: transcription factor TFIIA complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation factor IIA, gamma subunit (InterPro:IPR003194), Transcription factor IIA, beta-barrel (InterPro:IPR009088), Transcription initiation factor IIA, gamma subunit, N-terminal (InterPro:IPR015872), Transcription initiation factor IIA, gamma subunit, C-terminal (InterPro:IPR015871), Transcription factor IIA, helical (InterPro:IPR009083); Has 550 Blast hits to 550 proteins in 192 species: Archae - 0; Bacteria - 0; Metazoa - 186; Fungi - 161; Plants - 188; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5123eggNOG:KOG3463EMBL:AK317302EMBL:AY463599
EnsemblPlants:AT4G24440EnsemblPlants:AT4G24440.1EnsemblPlants:AT4G24440.2entrez:828546
ExpressionAtlas:Q53YU1Gene3D:1.10.287.190Gene3D:2.30.18.10GeneID:828546
GO:GO:0005672GO:GO:0006367Gramene:AT4G24440.1Gramene:AT4G24440.2
hmmpanther:PTHR10966InterPro:IPR003194InterPro:IPR009083InterPro:IPR009088
InterPro:IPR015871InterPro:IPR015872KEGG:ath:AT4G24440KO:K03123
OMA:ATAYYEFPANTHER:PTHR10966Pfam:PF02268Pfam:PF02751
Pfam:Q39236PhylomeDB:Q53YU1PIRSF:PIRSF009415ProDom:PD009224
RefSeq:NP_194175.1RefSeq:NP_849434.1SMR:Q53YU1STRING:3702.AT4G24440.1
SUPFAM:SSF47396SUPFAM:SSF50784TAIR:AT4G24440UniGene:At.25012
UniProt:Q39236UniProt:Q53YU1
Coordinates (TAIR10) chr4:+:12633460..12634553
Molecular Weight (calculated) 12140.70 Da
IEP (calculated) 5.71
GRAVY (calculated) -0.14
Length 106 amino acids
Sequence (TAIR10)
(BLAST)
001: MATFELYRRS TIGMCLTETL DEMVQSGTLS PELAIQVLVQ FDKSMTEALE SQVKTKVSIK GHLHTYRFCD NVWTFILQDA MFKSDDRQEN VSRVKIVACD
101: SKLLTQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)