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AT1G23570.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Domain of unknown function (DUF220)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Domain of unknown function (DUF220); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: Domain of unknown function DUF220 (TAIR:AT1G23580.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
EMBL:CP002684EnsemblPlants:AT1G23570EnsemblPlants:AT1G23570.1entrez:838967
ExpressionAtlas:B3H736GeneID:838967Gramene:AT1G23570.1hmmpanther:PTHR31385
hmmpanther:PTHR31385:SF1HOGENOM:HOG000006387InterPro:IPR003863PaxDb:B3H736
Pfam:PF02713PhylomeDB:B3H736PRIDE:B3H736Proteomes:UP000006548
RefSeq:NP_564198.3STRING:3702.AT1G23570.2TAIR:AT1G23570UniGene:At.51738
UniProt:B3H736
Coordinates (TAIR10) chr1:-:8355081..8356364
Molecular Weight (calculated) 30325.40 Da
IEP (calculated) 10.43
GRAVY (calculated) -1.03
Length 261 amino acids
Sequence (TAIR10)
(BLAST)
001: MVFTGFGGWV SQNNKQPRKA KPKKTENVES KSESEMVDNN NNHDKMKKYY DEDERKKQDQ VWIDAEKMHP WNDAPPKESK SRKVLMEDGP RQIAKVKKTV
101: DWKFLGSSFA VPISLIVDEN RKDLTAKYKK KKMILMKVFE GSYRVEPLYV DSERLCNNME PKSPAEYKRC SGGQGRIASK VTMNQYFKPY PPFNLPPLSW
201: YIRKVTIKNT KTALKTLQTW GINLRNPGAV TSTDKYGNVT ISPRKKRKTT NIENTRLNEY T
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)