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AT1G23170.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.972
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function DUF2359, transmembrane
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function DUF2359, transmembrane; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2359, transmembrane (InterPro:IPR019308); BEST Arabidopsis thaliana protein match is: Protein of unknown function DUF2359, transmembrane (TAIR:AT1G70770.2); Has 178 Blast hits to 160 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 70; Fungi - 0; Plants - 108; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:CP002684EnsemblPlants:AT1G23170EnsemblPlants:AT1G23170.1entrez:838925
ExpressionAtlas:F4I4N5GeneID:838925Gramene:AT1G23170.1hmmpanther:PTHR13448
hmmpanther:PTHR13448:SF1InterPro:IPR019308iPTMnet:F4I4N5PANTHER:PTHR13448
Pfam:PF10151PhylomeDB:F4I4N5PRIDE:F4I4N5Proteomes:UP000006548
RefSeq:NP_173730.1TAIR:AT1G23170UniGene:At.50936UniProt:F4I4N5
Coordinates (TAIR10) chr1:+:8212724..8215516
Molecular Weight (calculated) 61398.70 Da
IEP (calculated) 9.63
GRAVY (calculated) -0.26
Length 569 amino acids
Sequence (TAIR10)
(BLAST)
001: MDPIESVEYN GFETTNGNSH NDDHGWKKVV YPKRNRKQKP ADQAAATKNG VTGNLIPNGT LSNGGGNVFR SLEEQAEGRH LQILAAKKAS DTADVSDGGR
101: SKWRSNGYGD EGYDFDDSDS EIAVGKENLK AEEVKKPKVK KVKKPKVTLA EAAAKIDVSN LAAFLVEASI PLSHIPEAVY KTSADWINQR PIEALGAFVL
201: WGLDCILADL AVQQGGVKGG KKGAQQASSK SQVAIFVAVA MVLRKKPDAL TNILPTLREN PKYQGQDKLP VTVWMMAQAS QGDISVGLYS WAHNLLPVVS
301: SKSCNPQSRD LILQLVERIL SNPKARTILV NGAVRKGERL IPPPSFEILV RLTFPASSAR VKATERFEAI YPLLKEVSLA GAPGSKAMKQ VTQQIFTFAL
401: KAAGEENPLL AKEAAAITIW ALTQNVDCCK HWENLYTDNL KASVAVLKKL IGEWKERSVK LTPAETLTLN QTMKSLRQKN EEALTEGGNG VSQSLYKDAD
501: KYCKVIAGKL SSGGCIKSIA TTAALLAATG FAGAAALSAN PEAIAYLKNL VESLDINKFT ETVMTALKN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)