AT2G47650.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.500 vacuole 0.500 ASURE: golgi,vacuole What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : UDP-xylose synthase 4 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
encodes a protein similar to UDP-glucuronic acid decarboxylase. UDP-glucuronic acid decarboxylase produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
UDP-xylose synthase 4 (UXS4); FUNCTIONS IN: UDP-glucuronate decarboxylase activity, catalytic activity; INVOLVED IN: nucleotide-sugar metabolic process, D-xylose metabolic process; LOCATED IN: Golgi apparatus, plasma membrane, vacuole, membrane; EXPRESSED IN: cotyledon, male gametophyte, cultured cell, pollen tube, leaf; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G62830.2); Has 44652 Blast hits to 44610 proteins in 2978 species: Archae - 851; Bacteria - 26010; Metazoa - 746; Fungi - 333; Plants - 1297; Viruses - 49; Other Eukaryotes - 15366 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:19538751..19541364 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 49948.30 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.27 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 443 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASELTNRRH EIEQPEAESY YPKPIKPWFV AIRPIRYMLR EQRLVFVLVG IAIATLGFTI FSKSSNHQPI PYDVDPLSGY GMRSESSYLP ATIHKKPSIE 101: YMSRIGSAGG KIPLGLKRKV LRVVVTGGAG FVGSHLVDRL MARGDNVIVV DNFFTGRKEN VMHHFNNPNF EMIRHDVVEP ILLEVDQIYH LACPASPVHY 201: KFNPVKTIKT NVVGTLNMLG LAKRVGARFL LTSTSEVYGD PLQHPQVETY WGNVNPIGVR SCYDEGKRTA ETLTMDYHRG ANVEVRIARI FNTYGPRMCI 301: DDGRVVSNFV AQALRKEPLT VYGDGKQTRS FQFVSDLVEG LMRLMEGEHV GPFNLGNPGE FTMLELAKVV QETIDPNAKI EFRPNTEDDP HKRKPDITKA 401: KELLGWEPKV ALRQGLPLMV KDFRQRVFGD QKQDSSTTSS STE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)