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AT1G20810.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (plastidal marker)

At1g20810-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : FKBP-like peptidyl-prolyl cis-trans isomerase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FKBP-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: thylakoid lumen, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: FKBP-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT3G10060.1); Has 1763 Blast hits to 1744 proteins in 606 species: Archae - 0; Bacteria - 1027; Metazoa - 95; Fungi - 57; Plants - 263; Viruses - 0; Other Eukaryotes - 321 (source: NCBI BLink).
Protein Annotations
BioGrid:23911EC:5.2.1.8eggNOG:COG0545eggNOG:KOG0552
EMBL:AC069251EMBL:AK117407EMBL:BT005089EMBL:CP002684
EnsemblPlants:AT1G20810EnsemblPlants:AT1G20810.1entrez:838672GeneID:838672
Genevisible:Q9LM71GO:GO:0003755GO:GO:0006457GO:GO:0009507
GO:GO:0009543GO:GO:0031977Gramene:AT1G20810.1hmmpanther:PTHR10516
hmmpanther:PTHR10516:SF319HOGENOM:HOG000154887InParanoid:Q9LM71InterPro:IPR001179
InterPro:IPR023566KEGG:ath:AT1G20810KO:K01802OMA:IELLQVM
PANTHER:PTHR10516PaxDb:Q9LM71Pfam:PF00254Pfam:Q9LM71
Pfscan:PS50059PhylomeDB:Q9LM71PIR:E86340PRIDE:Q9LM71
PRO:PR:Q9LM71PROSITE:PS50059ProteinModelPortal:Q9LM71Proteomes:UP000006548
RefSeq:NP_173504.1SMR:Q9LM71STRING:3702.AT1G20810.1SUPFAM:SSF54534
TAIR:AT1G20810UniGene:At.41686UniProt:Q9LM71
Coordinates (TAIR10) chr1:+:7232025..7233367
Molecular Weight (calculated) 25531.50 Da
IEP (calculated) 9.80
GRAVY (calculated) -0.44
Length 232 amino acids
Sequence (TAIR10)
(BLAST)
001: MASISSLHRW ASNQHSRLPR ITSISEADQS RPINQVVAFS VPISRRDASI ILLSSIPLTS FFVLTPSSSE ARERRSRKVI PLEEYSTGPE GLKFYDIEEG
101: KGPVATEGST AQVHFDCRYR SITAISTRES KLLAGNRSIA QPYEFKVGST PGKERKREFV DNPNGLFSAQ AAPKPPPAMY FITEGMKVGG KRTVIVPPEA
201: GYGQKGMNEI PPGATFELNI ELLRVTPPPE EK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)