AT1G17480.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : IQ-domain 7 | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
IQ-domain 7 (IQD7); CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 8 (TAIR:AT1G72670.1); Has 807 Blast hits to 806 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 22; Fungi - 5; Plants - 778; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:6006675..6008132 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 41154.80 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 11.15 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.63 | ||||||||||||||||||||||||||||||||
| Length | 371 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGGSGNWIRS LISNRKPVND QQEKLSDKSS KKKWKLWRIS SESLASSSFK SRGSYAASSL GSELPSFSAD EAFTTAMAAL IRAPPRDFLM VKREWASTRI 101: QAAFRAFLAR QAFRALKAVV RIQAIFRGRQ VRKQAAVTLR CMQALVRVQS RVRAHRRAPS DSLELKDPVK QTEKGWCGSP RSIKEVKTKL QMKQEGAIKR 201: ERAMVYALTH QSRTCPSPSG RAITHHGLRK SSPGWNWYDD VGTFSRKSSE SSVLSEYETV TVRKNNLSST RVLARPPLLL PPVSSGMSYD SLHDETSTSS 301: TSQSPVAFSS SVLDGGGYYR KPSYMSLTQS TQAKQRQSGL SCNGDARRSA GSDQCTDLYP PGNVWAKSQR S |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)