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AT1G16300.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glyceraldehyde-3-phosphate dehydrogenase of plastid 2
Curator
Summary (TAIR10)
Encodes one of the chloroplast/plastid localized GAPDH isoforms (GAPCp1/At1g79530 and GAPCp2/At1g16300). gapcp double mutants display a drastic phenotype of arrested root development, dwarfism and sterility. GAPCps are important for the synthesis of serine in roots.
Computational
Description (TAIR10)
glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (GAPCP-2); CONTAINS InterPro DOMAIN/s: Glyceraldehyde 3-phosphate dehydrogenase subfamily (InterPro:IPR000173), Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain (InterPro:IPR020829), Glyceraldehyde-3-phosphate dehydrogenase, type I (InterPro:IPR006424), Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup (InterPro:IPR020832), Glyceraldehyde 3-phosphate dehydrogenase, active site (InterPro:IPR020830), Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain (InterPro:IPR020828); BEST Arabidopsis thaliana protein match is: glyceraldehyde-3-phosphate dehydrogenase of plastid 1 (TAIR:AT1G79530.1); Has 25238 Blast hits to 25227 proteins in 6343 species: Archae - 51; Bacteria - 10898; Metazoa - 2382; Fungi - 2852; Plants - 3834; Viruses - 0; Other Eukaryotes - 5221 (source: NCBI BLink).
Protein Annotations
BRENDA:1.2.1.12EC:1.2.1.12eggNOG:COG0057eggNOG:KOG0657
EMBL:AC006341EMBL:AY088762EMBL:BT002867EMBL:BT021096
EMBL:CP002684EnsemblPlants:AT1G16300EnsemblPlants:AT1G16300.1entrez:838199
Gene3D:3.40.50.720GeneID:838199Genevisible:Q5E924GO:GO:0004365
GO:GO:0005975GO:GO:0006006GO:GO:0006096GO:GO:0009536
GO:GO:0009570GO:GO:0050661GO:GO:0051287GO:GO:0080022
GO:GO:0080144Gramene:AT1G16300.1gramene_pathway:1.2.1.12gramene_pathway:GLYCOLYSIS
gramene_pathway:PWY-1042gramene_pathway:PWYQT-4428hmmpanther:PTHR10836hmmpanther:PTHR10836:SF46
HOGENOM:HOG000071678InParanoid:Q5E924InterPro:IPR006424InterPro:IPR016040
InterPro:IPR020828InterPro:IPR020829InterPro:IPR020830InterPro:IPR020831
iPTMnet:Q5E924KEGG:00010+1.2.1.12KEGG:00710+1.2.1.12KEGG:ath:AT1G16300
KO:K00134OMA:RAAWEWDPANTHER:PTHR10836PaxDb:Q5E924
Pfam:PF00044Pfam:PF02800Pfam:Q5E924PhylomeDB:Q5E924
PIR:A86298PRIDE:Q5E924PRINTS:PR00078PRO:PR:Q5E924
PROSITE:PS00071ProteinModelPortal:Q5E924Proteomes:UP000006548Reactome:R-ATH-70171
Reactome:R-ATH-70263RefSeq:NP_173080.1scanprosite:PS00071SMART:SM00846
SMR:Q5E924STRING:3702.AT1G16300.1SUPFAM:SSF51735SUPFAM:SSF55347
TAIR:AT1G16300tair10-symbols:GAPCP-2TIGRfam:TIGR01534TIGRFAMs:TIGR01534
UniGene:At.41889unipathway:UPA00109UniProt:Q5E924
Coordinates (TAIR10) chr1:+:5574433..5577406
Molecular Weight (calculated) 44848.30 Da
IEP (calculated) 8.93
GRAVY (calculated) -0.11
Length 420 amino acids
Sequence (TAIR10)
(BLAST)
001: MALSSLLRSA ATSAAAPRVE LYPSSSYNHS QVTSSLGFSH SLTSSRFSGA AVSTGKYNAK RVQPIKATAT EAPPAVHRSR SSGKTKVGIN GFGRIGRLVL
101: RIATFRDDIE VVAVNDPFID AKYMAYMFKY DSTHGNYKGT INVIDDSTLE INGKQVKVVS KRDPAEIPWA DLGAEYVVES SGVFTTVGQA SSHLKGGAKK
201: VIISAPSADA PMFVVGVNEK TYLPNMDIVS NASCTTNCLA PLAKVVHEEF GILEGLMTTV HATTATQKTV DGPSMKDWRG GRGASQNIIP SSTGAAKAVG
301: KVLPELNGKL TGMAFRVPTP NVSVVDLTCR LEKDASYEDV KAAIKFASEG PLRGILGYTE EDVVSNDFLG DSRSSIFDAN AGIGLSKSFM KLVSWYDNEW
401: GYSNRVLDLI EHMALVAASR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)