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AT1G66580.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:17934214 (2008): cytosol
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15734919 (2005): cytosol cytosolic ribosomes
  • PMID:15215502 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : senescence associated gene 24
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
senescence associated gene 24 (SAG24); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: response to UV-B, translation; LOCATED IN: cytosolic ribosome, ribosome, cytosolic large ribosomal subunit, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L10e (InterPro:IPR001197), Ribosomal protein L10e/L16 (InterPro:IPR016180), Ribosomal protein L10e, conserved site (InterPro:IPR018255); BEST Arabidopsis thaliana protein match is: Ribosomal protein L16p/L10e family protein (TAIR:AT1G26910.1); Has 1679 Blast hits to 1677 proteins in 605 species: Archae - 325; Bacteria - 13; Metazoa - 562; Fungi - 162; Plants - 159; Viruses - 0; Other Eukaryotes - 458 (source: NCBI BLink).
Protein Annotations
BioGrid:28197eggNOG:COG0197eggNOG:KOG0857EMBL:AC079285
EMBL:AF367276EMBL:AY055103EMBL:AY087426EMBL:CP002684
EnsemblPlants:AT1G66580EnsemblPlants:AT1G66580.1entrez:842976Gene3D:3.90.1170.10
GeneID:842976Genevisible:Q93W22GO:GO:0000027GO:GO:0003735
GO:GO:0005634GO:GO:0005737GO:GO:0005773GO:GO:0005774
GO:GO:0005840GO:GO:0006412GO:GO:0010224GO:GO:0022625
GO:GO:0022626GO:GO:0032502Gramene:AT1G66580.1hmmpanther:PTHR11726
hmmpanther:PTHR11726:SF15HOGENOM:HOG000223754InParanoid:Q93W22InterPro:IPR001197
InterPro:IPR016180InterPro:IPR018255iPTMnet:Q93W22KEGG:ath:AT1G66580
KO:K02866OMA:VQFLANHPaxDb:Q93W22Pfam:PF00252
Pfam:Q93W22PhylomeDB:Q93W22PIR:F96691PIRSF:PIRSF005590
PRIDE:Q93W22PRO:PR:Q93W22PROSITE:PS01257ProteinModelPortal:Q93W22
Proteomes:UP000006548Reactome:R-ATH-156827Reactome:R-ATH-1799339Reactome:R-ATH-72689
Reactome:R-ATH-72706Reactome:R-ATH-975956Reactome:R-ATH-975957RefSeq:NP_564878.1
scanprosite:PS01257SMR:Q93W22STRING:3702.AT1G66580.1SUPFAM:SSF54686
TAIR:AT1G66580tair10-symbols:RPL10Ctair10-symbols:SAG24TIGRfam:TIGR00279
TIGRFAMs:TIGR00279UniGene:At.17501UniGene:At.20914UniProt:Q93W22
Coordinates (TAIR10) chr1:+:24839208..24840439
Molecular Weight (calculated) 24930.70 Da
IEP (calculated) 11.22
GRAVY (calculated) -0.43
Length 221 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRRPARCYR QIKGKPYPKS RYCRGVPDPK IRIYDVGMKR KGVDEFPFCV HLVSWEKENV SSEALEAARI ACNKYMVKSA GKDAFHLRIR VHPFHVLRIN
101: KMLSCAGADR LQTGMRGAFG KALGTCARVA IGQVLLSVRC KDNHGVHAQE ALRRAKFKFP GRQKIIVSRK WGFTKFNRAE YTKLRAMKRI VPDGVNAKFL
201: SNHGPLANRQ PGSAFISATS E
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)