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AT3G46040.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:23323832 (2013): plasma membrane
  • PMID:22550958 (2012): plastid
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:17934214 (2008): cytosol
  • PMID:15734919 (2005): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ribosomal protein S15A D
Curator
Summary (TAIR10)
Regulated by TCP20.
Computational
Description (TAIR10)
ribosomal protein S15A D (RPS15AD); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S8 (InterPro:IPR000630); BEST Arabidopsis thaliana protein match is: Ribosomal protein S8 family protein (TAIR:AT5G59850.1); Has 3503 Blast hits to 3503 proteins in 1362 species: Archae - 277; Bacteria - 1878; Metazoa - 431; Fungi - 223; Plants - 255; Viruses - 0; Other Eukaryotes - 439 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0096eggNOG:KOG1754EMBL:AL355775EMBL:AY045837
EMBL:AY091373EMBL:CP002686EnsemblPlants:AT3G46040EnsemblPlants:AT3G46040.1
entrez:823747GeneID:823747Genevisible:Q9LX88GO:GO:0003735
GO:GO:0006412GO:GO:0022626GO:GO:0022627Gramene:AT3G46040.1
HAMAP:MF_01302_Ahmmpanther:PTHR11758hmmpanther:PTHR11758:SF16HOGENOM:HOG000204097
InParanoid:Q9LX88InterPro:IPR000630KEGG:ath:AT3G46040KO:K02957
OMA:QKHGYINPANTHER:PTHR11758PaxDb:Q9LX88Pfam:PF00410
Pfam:Q9LX88PhylomeDB:Q9LX88PIR:T49245PRIDE:Q9LX88
PRO:PR:Q9LX88PROSITE:PS00053ProteinModelPortal:Q9LX88Proteomes:UP000006548
Reactome:R-ATH-156827Reactome:R-ATH-1799339Reactome:R-ATH-72689Reactome:R-ATH-72695
Reactome:R-ATH-72702Reactome:R-ATH-72706Reactome:R-ATH-975956Reactome:R-ATH-975957
RefSeq:NP_190190.1scanprosite:PS00053SMR:Q9LX88STRING:3702.AT3G46040.1
SUPFAM:SSF56047TAIR:AT3G46040tair10-symbols:RPS15ADUniGene:At.23585
UniProt:Q9LX88
Coordinates (TAIR10) chr3:+:16914891..16915529
Molecular Weight (calculated) 14775.30 Da
IEP (calculated) 10.55
GRAVY (calculated) -0.15
Length 130 amino acids
Sequence (TAIR10)
(BLAST)
001: MVRISVLNDG LKSMYNAEKR GKRQVMIRPS SKVIIKFLIV MQKHGYIGEF EYVDDHRSGK IVVELNGRLN KCGVISPRFD VGVKEIEGWT ARLLPSRQFG
101: FIVLTTSAGI MDHEEARRKN VGGKVLGFFY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)