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AT5G22140.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24030099 (2013): plasma membrane
  • PMID:22430844 (2012): Golgi
  • PMID:22318864 (2012): plasma membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : FAD/NAD(P)-binding oxidoreductase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FAD/NAD(P)-binding oxidoreductase family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding; INVOLVED IN: oxidation reduction; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327); BEST Arabidopsis thaliana protein match is: FAD/NAD(P)-binding oxidoreductase family protein (TAIR:AT3G44190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1252eggNOG:KOG2495EMBL:AL589883EMBL:CP002688
EnsemblPlants:AT5G22140EnsemblPlants:AT5G22140.1entrez:832275ExpressionAtlas:Q9C574
Gene3D:3.50.50.60GeneID:832275GO:GO:0005794GO:GO:0005886
GO:GO:0009506GO:GO:0016491Gramene:AT5G22140.1hmmpanther:PTHR22912
hmmpanther:PTHR22912:SF180InterPro:IPR023753KEGG:ath:AT5G22140OMA:GYIAETH
Pfam:PF07992PhylomeDB:Q9C574Proteomes:UP000006548RefSeq:NP_680200.1
SMR:Q9C574STRING:3702.AT5G22140.1SUPFAM:SSF51905SwissPalm:Q9C574
TAIR:AT5G22140UniGene:At.45631UniProt:Q9C574
Coordinates (TAIR10) chr5:-:7340284..7341657
Molecular Weight (calculated) 39711.20 Da
IEP (calculated) 9.76
GRAVY (calculated) -0.16
Length 365 amino acids
Sequence (TAIR10)
(BLAST)
001: MEGIESGSKQ GKRVVVIGGG IAGSLAAKLL QFDAEVTLID PKEYFEITWA SLRSMVEPKF AERTVINHKS YLKQGRLVTS PAINITESDV MTEDGSVIGY
101: DYLVIATGHN DLFPKTRQEK LSHYQSEYEK IKSSGSVLIV GGGPSGVELA AEIAVDFPEK KVTLVHKGPR LLEFVGQKAA DKASDWLESK KVEVILNQSV
201: DLSSASDGNK IYRTSGGETI HADIHFLCVG KPLSSQWLNG TVLKDSLDGK GRVMVDEYLR IRGRSNVFAV GDITNIPEMK QGYIAETHAN VVVKNIKVMM
301: SGGKKKKMST YKPGPELAIV SLGRKDSVAQ FPFVTVVGCL PGLIKSKDLF VGKTRKARGL NPKLV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)