suba logo
AT1G06870.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
mitochondrion 0.984
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:16729891 (2006): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Peptidase S24/S26A/S26B/S26C family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Peptidase S24/S26A/S26B/S26C family protein; FUNCTIONS IN: serine-type peptidase activity, peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: Peptidase S24/S26A/S26B/S26C, beta-ribbon domain (InterPro:IPR011056), Peptidase S24/S26A/S26B/S26C (InterPro:IPR015927), Peptidase S26A, signal peptidase I, conserved site (InterPro:IPR019758), Peptidase S26, conserved region (InterPro:IPR019533), Peptidase S26A, signal peptidase I (InterPro:IPR000223), Peptidase S26A, signal peptidase I, serine active site (InterPro:IPR019756); BEST Arabidopsis thaliana protein match is: thylakoid processing peptide (TAIR:AT2G30440.1); Has 9578 Blast hits to 9341 proteins in 2371 species: Archae - 0; Bacteria - 7160; Metazoa - 214; Fungi - 105; Plants - 244; Viruses - 0; Other Eukaryotes - 1855 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G06870-MONOMERChEMBL:CHEMBL1932907EC:3.4.21.89eggNOG:COG0681
eggNOG:KOG0171EMBL:AC011001EMBL:AY085489EMBL:BT024745
EMBL:CP002684EnsemblPlants:AT1G06870EnsemblPlants:AT1G06870.1entrez:837198
Gene3D:2.10.109.10GeneID:837198Genevisible:Q9M9Z2GO:GO:0004252
GO:GO:0006465GO:GO:0009535GO:GO:0010027GO:GO:0016021
Gramene:AT1G06870.1hmmpanther:PTHR12383hmmpanther:PTHR12383:SF15HOGENOM:HOG000243179
InParanoid:Q9M9Z2InterPro:IPR000223InterPro:IPR015927InterPro:IPR019533
InterPro:IPR019756InterPro:IPR019758InterPro:IPR028360iPTMnet:Q9M9Z2
KEGG:ath:AT1G06870KO:K03100MEROPS:S26.A01OMA:SSMYSTI
PANTHER:PTHR12383PaxDb:Q9M9Z2Pfam:PF10502Pfam:Q9M9Z2
PhylomeDB:Q9M9Z2PIR:E86203PRIDE:Q9M9Z2PRINTS:PR00727
PRO:PR:Q9M9Z2PROSITE:PS00501PROSITE:PS00761ProteinModelPortal:Q9M9Z2
Proteomes:UP000006548RefSeq:NP_172171.1scanprosite:PS00501scanprosite:PS00761
SMR:Q9M9Z2STRING:3702.AT1G06870.1SUPFAM:SSF51306TAIR:AT1G06870
TIGRfam:TIGR02227TIGRFAMs:TIGR02227UniGene:At.23784UniProt:Q9M9Z2
Coordinates (TAIR10) chr1:+:2108832..2110642
Molecular Weight (calculated) 40152.20 Da
IEP (calculated) 6.99
GRAVY (calculated) -0.05
Length 367 amino acids
Sequence (TAIR10)
(BLAST)
001: MAIRVTFTYS SYVARSIASS AGTRVGTGDV RSCFETWVRP RFCGHNQIPD IVDKSPGSNT WGPSSGPRAR PASSMYSTIA REILEEGCKS PLVLGMISLM
101: NLTGAPQFSG MTGLGISPFK TSSVIPFLRG SKWMPCSIPA TLSTDIAEVD RGGKVCDPKV KLELSDKVSN GGNGWVNKLL NICSEDAKAA FTAVTVSLLF
201: RSALAEPKSI PSTSMLPTLD VGDRVIAEKV SYFFRKPEVS DIVIFKAPPI LVEHGYSCAD VFIKRIVASE GDWVEVCDGK LLVNDTVQAE DFVLEPIDYE
301: MEPMFVPEGY VFVLGDNRNK SFDSHNWGPL PIKNIIGRSV FRYWPPSKVS DIIHHEQVSQ KRAVDVS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)