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AT1G15470.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.658
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G15610.1); Has 41653 Blast hits to 22434 proteins in 735 species: Archae - 64; Bacteria - 7048; Metazoa - 15440; Fungi - 9730; Plants - 4355; Viruses - 0; Other Eukaryotes - 5016 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XPJ4eggNOG:KOG0278EMBL:AC007591EMBL:AY084604
EMBL:BT000935EMBL:CP002684EnsemblPlants:AT1G15470EnsemblPlants:AT1G15470.1
entrez:838117Gene3D:2.130.10.10GeneID:838117Gramene:AT1G15470.1
hmmpanther:PTHR19877HOGENOM:HOG000174258InterPro:IPR001680InterPro:IPR015943
InterPro:IPR017986InterPro:IPR019775KEGG:ath:AT1G15470KO:K13137
OMA:EPKHGNTPfam:PF00400Pfscan:PS50082Pfscan:PS50294
PhylomeDB:Q9XI22PROSITE:PS00678PROSITE:PS50082PROSITE:PS50294
Proteomes:UP000006548RefSeq:NP_563978.1scanprosite:PS00678SMART:SM00320
SMR:Q9XI22STRING:3702.AT1G15470.1SUPFAM:SSF50978TAIR:AT1G15470
UniGene:At.11430UniProt:Q9XI22
Coordinates (TAIR10) chr1:+:5315838..5317696
Molecular Weight (calculated) 36346.40 Da
IEP (calculated) 6.08
GRAVY (calculated) -0.40
Length 333 amino acids
Sequence (TAIR10)
(BLAST)
001: MGAPLVCHGH SRPVVDVAYS PVTPDGFFLI SASKDSNPML RNGETGDWIG TFEGHKGAVW SCSLDKNAIR AASASADFTA KIWNALTGDE LHSFEHKHIV
101: RACAFSEDTH RLLTGGMEKI LRIFDLNRPD APPKEVGNSP GSIRTVEWLH SDNTILSSCT DTGDIRLWDI RSDKIVHTLE TKSPVTSAEV SQDGRYITTA
201: DGSSVKFWDA KNFGLLKSYD MPCNVESASL EPKHGNTFIA GGEDMWVHRF DFQTGEEIGC NKGHHGPVHC VRYAPGGESY TSGSEDGTVR IWVVGSVNHP
301: EESNLSGHVK LVAEEVVRKA ESLRISEKAA EAK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)