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AT1G30540.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.996
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Actin-like ATPase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Actin-like ATPase superfamily protein; CONTAINS InterPro DOMAIN/s: ATPase, BadF/BadG/BcrA/BcrD type (InterPro:IPR002731); Has 1833 Blast hits to 1833 proteins in 714 species: Archae - 64; Bacteria - 1392; Metazoa - 117; Fungi - 35; Plants - 122; Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink).
Protein Annotations
DNASU:839934eggNOG:COG2971eggNOG:KOG1794EMBL:AK227991
EMBL:AY084324EMBL:BT006432EMBL:CP002684EnsemblPlants:AT1G30540
EnsemblPlants:AT1G30540.1entrez:839934GeneID:839934Gramene:AT1G30540.1
hmmpanther:PTHR12862hmmpanther:PTHR12862:SF6InterPro:IPR002731KEGG:ath:AT1G30540
OMA:LEQVMMQPfam:PF01869PhylomeDB:Q8LGE0Proteomes:UP000006548
RefSeq:NP_564358.1SMR:Q8LGE0STRING:3702.AT1G30540.1SUPFAM:SSF53067
TAIR:AT1G30540UniGene:At.27951UniProt:Q8LGE0
Coordinates (TAIR10) chr1:-:10816951..10819172
Molecular Weight (calculated) 36614.70 Da
IEP (calculated) 4.83
GRAVY (calculated) 0.08
Length 351 amino acids
Sequence (TAIR10)
(BLAST)
001: MRNPHSNGNL RKLEADGGGE ATEENGFVNG VILGLDGGAT STVCVCVPFF SFGERFPDPL PILGRAVAGC TNRNSVGETA ARDSLEQVIS EALVQSGFDK
101: SDVRGVCLGV SGVNHPSDQE KIENWIRDMF PSHVKVYVQN DAIVALASGT MGKLHGCVLI AGTGCIAYGF DEDGKEARAS GGGPILGDWG SGYGIAAQAL
201: TAVIRAHDGR GPQTMLTSTI LKALGLSSPD ELIGWTYADP SWARIAALVP QVVSCAEAGD EISDKILVDA AEDLALSVKA VVQRLGLCGK DGTASFPVVM
301: VGGVLNANQK WDIGKEVSKR INRYFPGAQT IIPKVEPAVG AALLAMNFLS S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)