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AT1G14870.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31541795 (2020): plasma membrane
  • PMID:31520498 (2020): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:22923678 (2012): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:16618929 (2006): plasma membrane
  • PMID:15574830 (2004): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : PLANT CADMIUM RESISTANCE 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PLANT CADMIUM RESISTANCE 2 (PCR2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: plasma membrane; EXPRESSED IN: callus; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: PLAC8 family protein (TAIR:AT5G35525.1); Has 803 Blast hits to 802 proteins in 112 species: Archae - 0; Bacteria - 0; Metazoa - 123; Fungi - 115; Plants - 527; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).
Protein Annotations
BioGrid:23292eggNOG:ENOG410IZQReggNOG:ENOG410XUTPEMBL:AC006917
EMBL:AY072397EMBL:AY114701EMBL:CP002684EnsemblPlants:AT1G14870
EnsemblPlants:AT1G14870.1entrez:838052GeneID:838052Genevisible:Q9LQU4
GO:GO:0005886GO:GO:0006979GO:GO:0016021Gramene:AT1G14870.1
hmmpanther:PTHR15907hmmpanther:PTHR15907:SF43HOGENOM:HOG000237749InParanoid:Q9LQU4
InterPro:IPR006461KEGG:ath:AT1G14870OMA:CTLVQNEPaxDb:Q9LQU4
Pfam:PF04749Pfam:Q9LQU4PhylomeDB:Q9LQU4PRIDE:Q9LQU4
PRO:PR:Q9LQU4PROSITE:PS00010Proteomes:UP000006548RefSeq:NP_172940.1
STRING:3702.AT1G14870.1SwissPalm:Q9LQU4TAIR:AT1G14870tair10-symbols:PCR2
TCDB:1.A.87.3.8TIGRfam:TIGR01571TIGRFAMs:TIGR01571TMHMM:TMhelix
UniGene:At.43506UniProt:Q9LQU4
Coordinates (TAIR10) chr1:-:5128591..5129458
Molecular Weight (calculated) 16743.00 Da
IEP (calculated) 6.91
GRAVY (calculated) -0.13
Length 152 amino acids
Sequence (TAIR10)
(BLAST)
001: MEAQHLHAKP HAEGEWSTGF CDCFSDCKNC CITFWCPCIT FGQVAEIVDR GSTSCGTAGA LYALIAVVTG CACIYSCFYR GKMRAQYNIK GDDCTDCLKH
101: FCCELCSLTQ QYRELKHRGY DMSLGWAGNV ERQQNQGGVA MGAPVFQGGM TR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)