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AT1G14720.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : xyloglucan endotransglucosylase/hydrolase 28
Curator
Summary (TAIR10)
member of Glycoside Hydrolase Family 16
Computational
Description (TAIR10)
xyloglucan endotransglucosylase/hydrolase 28 (XTH28); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: fruit development, stamen filament development; LOCATED IN: endomembrane system, cell wall, apoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: endoxyloglucan transferase A3 (TAIR:AT2G01850.1); Has 2041 Blast hits to 2031 proteins in 289 species: Archae - 0; Bacteria - 238; Metazoa - 0; Fungi - 395; Plants - 1341; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G14720-MONOMERBioGrid:23277BRENDA:2.4.1.207CAZy:GH16
EC:2.4.1.207eggNOG:COG2273eggNOG:ENOG410IGGJEMBL:AC006917
EMBL:AF163820EMBL:AF385714EMBL:AY085855EMBL:CP002684
EMBL:D63510EMBL:U43487EnsemblPlants:AT1G14720EnsemblPlants:AT1G14720.1
entrez:838037Gene3D:2.60.120.200GeneID:838037Genevisible:Q38909
GO:GO:0004553GO:GO:0005618GO:GO:0010154GO:GO:0010411
GO:GO:0016762GO:GO:0042546GO:GO:0048046GO:GO:0071555
GO:GO:0080086Gramene:AT1G14720.1hmmpanther:PTHR31062hmmpanther:PTHR31062:SF44
HOGENOM:HOG000236368InParanoid:Q38909InterPro:IPR000757InterPro:IPR010713
InterPro:IPR013320InterPro:IPR016455KEGG:ath:AT1G14720KO:K08235
MINT:MINT-8067472OMA:REFKRTEPaxDb:Q38909Pfam:PF00722
Pfam:PF06955Pfam:Q38909Pfscan:PS51762PhylomeDB:Q38909
PIR:S71224PIRSF:PIRSF005604PRIDE:Q38909PRO:PR:Q38909
PROSITE:PS51762ProteinModelPortal:Q38909Proteomes:UP000006548RefSeq:NP_172925.1
SMR:Q38909STRING:3702.AT1G14720.1SUPFAM:SSF49899TAIR:AT1G14720
tair10-symbols:ATXTH28tair10-symbols:EXGT-A2tair10-symbols:XTH28tair10-symbols:XTR2
UniGene:At.279UniProt:Q38909
Coordinates (TAIR10) chr1:-:5066806..5068466
Molecular Weight (calculated) 38254.40 Da
IEP (calculated) 8.01
GRAVY (calculated) -0.38
Length 332 amino acids
Sequence (TAIR10)
(BLAST)
001: MGFITRFLVF MSLFTSLVSG FALQKLPLIQ FDEGYTQLFG DQNLIVHRDG KSVRLTLDER TGSGFVSNDI YLHGFFSSSI KLPADYSAGV VIAFYLSNGD
101: LYEKNHDEID FEFLGNIRGR EWRIQTNIYG NGSTHLGREE RYNLWFDPTE DFHQYSILWS LSHIIFYVDN VPIREVKRTA SMGGDFPAKP MSLYSTIWDG
201: SKWATDGGKY GVNYKYAPYV SQFTDLILHG CAVDPTEKFP SCKDEAVQNL RLASEITESQ RNKMEIFRQK HMTYSYCYDH MRYKVVLSEC VVNPAEAKRL
301: RVYDPVTFGG IPHGHRRGKH RSRSRLARTE SI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)