AT3G52500.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:extracellular 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Eukaryotic aspartyl protease family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cell wall, membrane, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT5G45120.1); Has 2297 Blast hits to 2281 proteins in 180 species: Archae - 0; Bacteria - 0; Metazoa - 245; Fungi - 122; Plants - 1871; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:-:19465644..19467053 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 51007.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.30 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.15 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 469 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MASSIFFFFL IFLSVVSAVK LPLSPFSHSD QSPKDPYLSL RRLAESSIAR AHKLKHGTSI KPDEDALSST TTASATVVKS PLSAKSYGGY SVSLSFGTPS 101: QTIPFVFDTG SSLVWLPCTS RYLCSGCDFS GLDPTLIPRF IPKNSSSSKI IGCQSPKCQF LYGPNVQCRG CDPNTRNCTV GCPPYILQYG LGSTAGVLIT 201: EKLDFPDLTV PDFVVGCSII STRQPAGIAG FGRGPVSLPS QMNLKRFSHC LVSRRFDDTN VTTDLDLDTG SGHNSGSKTP GLTYTPFRKN PNVSNKAFLE 301: YYYLNLRRIY VGRKHVKIPY KYLAPGTNGD GGSIVDSGST FTFMERPVFE LVAEEFASQM SNYTREKDLE KETGLGPCFN ISGKGDVTVP ELIFEFKGGA 401: KLELPLSNYF TFVGNTDTVC LTVVSDKTVN PSGGTGPAII LGSFQQQNYL VEYDLENDRF GFAKKKCSP |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)