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AT1G14205.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal L18p/L5e family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal L18p/L5e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18/L5 (InterPro:IPR005484); BEST Arabidopsis thaliana protein match is: Ribosomal L18p/L5e family protein (TAIR:AT1G48350.1); Has 2486 Blast hits to 2465 proteins in 979 species: Archae - 0; Bacteria - 1979; Metazoa - 0; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 404 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IN4IeggNOG:ENOG410Y2MQEMBL:CP002684EnsemblPlants:AT1G14205
EnsemblPlants:AT1G14205.1entrez:837981GeneID:837981GO:GO:0003735
GO:GO:0005840GO:GO:0006412Gramene:AT1G14205.1hmmpanther:PTHR12899
hmmpanther:PTHR12899:SF8InParanoid:F4HUG8InterPro:IPR005484KEGG:ath:AT1G14205
OMA:FGICINHPaxDb:F4HUG8Pfam:PF00861ProteinModelPortal:F4HUG8
Proteomes:UP000006548RefSeq:NP_683305.2SMR:F4HUG8SUPFAM:SSF53137
TAIR:AT1G14205UniGene:At.22450UniGene:At.51606UniProt:F4HUG8
Coordinates (TAIR10) chr1:+:4855582..4856762
Molecular Weight (calculated) 18689.80 Da
IEP (calculated) 10.74
GRAVY (calculated) -0.38
Length 165 amino acids
Sequence (TAIR10)
(BLAST)
001: MAALTSLSTV QFRVSDILGT RLKPYPQFPI RITTMSVVKP FVIEARGNTR VESPKTRNRR SRKKFTGTQT KPRLSVFCSD KQLYAMLVDD FNKKCLFYAS
101: TLQKSIRGDP PCTVIEAAKR VGEELIKASI DLKINEISSY DRNGNKRGER MQAFEIAIAQ HGFLP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)