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AT1G12990.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.994
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : beta-1,4-N-acetylglucosaminyltransferase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
beta-1,4-N-acetylglucosaminyltransferase family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity; INVOLVED IN: protein amino acid N-linked glycosylation; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 17 (InterPro:IPR006813); BEST Arabidopsis thaliana protein match is: beta-1,4-N-acetylglucosaminyltransferase family protein (TAIR:AT1G67880.1); Has 1071 Blast hits to 1070 proteins in 91 species: Archae - 0; Bacteria - 41; Metazoa - 59; Fungi - 34; Plants - 127; Viruses - 4; Other Eukaryotes - 806 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IEQJeggNOG:ENOG410YQKPEMBL:CP002684EMBL:KJ139011
EnsemblPlants:AT1G12990EnsemblPlants:AT1G12990.1entrez:837857GeneID:837857
GO:GO:0003830GO:GO:0006487GO:GO:0016021Gramene:AT1G12990.1
hmmpanther:PTHR12224hmmpanther:PTHR12224:SF1InterPro:IPR006813KEGG:00510+2.4.1.144
KEGG:ath:AT1G12990KO:K00737OMA:YINDFIFPANTHER:PTHR12224
Pfam:PF04724Proteomes:UP000006548Reactome:R-ATH-975574RefSeq:NP_172759.2
STRING:3702.AT1G12990.1TAIR:AT1G12990TMHMM:TMhelixUniGene:At.11247
unipathway:UPA00378UniProt:F4HP06
Coordinates (TAIR10) chr1:+:4433973..4435552
Molecular Weight (calculated) 45919.40 Da
IEP (calculated) 8.03
GRAVY (calculated) -0.23
Length 392 amino acids
Sequence (TAIR10)
(BLAST)
001: MWWMMGEAGG HYCSKKTDDI CGGVCSQEPG RFFSFSRLCC ALRGVDMKTY IFLLVIVPTC VLAGYVHGQK ISYFLRPLWE SPPKPFHDIP HYYHENASME
101: TLCKLHGWGV RDYPRRVYDA VLFSNELDIL AVRWRELFPY ITQFVLLESN TTFTGLPKPL VFAAHRDEFK FIESRLTYGT VGGRFVKGQN PFYEEAYQRV
201: ALDQLLRIAG ITDDDLLLMS DVDEIPSRHT INLLRWCDEI PKILHLRLKN YLYSFEFLVD NKSWRASIHR YETGKTRYAH YRQSDEILAD AGWHCSFCFR
301: RISEFIFKMK AYSHNDRVRF GHFLNPKRVQ RVICKGADLF DMLPEEYTFK EIIGKMGPIP HSFSAVHLPS YLLENADKYR FLLPGNCIRE SE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)