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AT1G12940.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.997
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : nitrate transporter2.5
Curator
Summary (TAIR10)
member of High affinity nitrate transporter family
Computational
Description (TAIR10)
nitrate transporter2.5 (NRT2.5); FUNCTIONS IN: nitrate transmembrane transporter activity; INVOLVED IN: transmembrane transport; LOCATED IN: plasma membrane; EXPRESSED IN: stem, inflorescence meristem; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: nitrate transporter 2:1 (TAIR:AT1G08090.1); Has 4805 Blast hits to 4611 proteins in 1220 species: Archae - 64; Bacteria - 3952; Metazoa - 78; Fungi - 287; Plants - 251; Viruses - 0; Other Eukaryotes - 173 (source: NCBI BLink).
Protein Annotations
BioGrid:23092eggNOG:COG2223eggNOG:ENOG410IE1FEMBL:AC012187
EMBL:CP002684EnsemblPlants:AT1G12940EnsemblPlants:AT1G12940.1entrez:837852
GeneID:837852Genevisible:Q9LPV5GO:GO:0005886GO:GO:0016021
GO:GO:0042128GO:GO:0055085Gramene:AT1G12940.1hmmpanther:PTHR23515
hmmpanther:PTHR23515:SF3HOGENOM:HOG000196276InParanoid:Q9LPV5InterPro:IPR011701
InterPro:IPR020846KEGG:ath:AT1G12940KO:K02575OMA:LWVVQTI
PaxDb:Q9LPV5Pfam:PF07690Pfam:Q9LPV5PhylomeDB:Q9LPV5
PIR:C86263PRIDE:Q9LPV5PRO:PR:Q9LPV5ProteinModelPortal:Q9LPV5
Proteomes:UP000006548RefSeq:NP_172754.1STRING:3702.AT1G12940.1SUPFAM:SSF103473
TAIR:AT1G12940tair10-symbols:ATNRT2.5tair10-symbols:NRT2.5TMHMM:TMhelix
UniGene:At.42054UniProt:Q9LPV5
Coordinates (TAIR10) chr1:+:4416405..4418337
Molecular Weight (calculated) 54264.90 Da
IEP (calculated) 8.82
GRAVY (calculated) 0.38
Length 502 amino acids
Sequence (TAIR10)
(BLAST)
001: MEVEGKGGEA GTTTTTAPRR FALPVDAENK ATTFRLFSVA KPHMRAFHLS WFQFFCCFVS TFAAPPLLPV IRENLNLTAT DIGNAGIASV SGAVFARIVM
101: GTACDLFGPR LASAALTLST APAVYFTAGI KSPIGFIMVR FFAGFSLATF VSTQFWMSSM FSGPVVGSAN GIAAGWGNLG GGATQLIMPI VFSLIRNMGA
201: TKFTAWRIAF FIPGLFQTLS AFAVLLFGQD LPDGDYWAMH KSGEREKDDV GKVISNGIKN YRGWITALAY GYCFGVELTI DNIIAEYFFD RFHLKLQTAG
301: IIAASFGLAN FFARPGGGIF SDFMSRRFGM RGRLWAWWIV QTSGGVLCAC LGQISSLTVS IIVMLVFSVF VQAACGLTFG VVPFISRRSL GVVSGMTGAG
401: GNVGAVLTQL IFFKGSTYTR ETGITLMGVM SIACSLPICL IYFPQWGGMF CGPSSKKVTE EDYYLAEWND EEKEKNLHIG SQKFAETSIS ERGRATTTHP
501: QT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)