AT1G10540.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : nucleobase-ascorbate transporter 8 | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
nucleobase-ascorbate transporter 8 (NAT8); FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Xanthine/uracil/vitamin C permease (InterPro:IPR006043); BEST Arabidopsis thaliana protein match is: nucleobase-ascorbate transporter 7 (TAIR:AT1G60030.1); Has 9247 Blast hits to 9232 proteins in 1900 species: Archae - 67; Bacteria - 7567; Metazoa - 351; Fungi - 128; Plants - 453; Viruses - 1; Other Eukaryotes - 680 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:-:3475024..3477756 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 59518.80 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 9.37 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.40 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 539 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MAGDGVENAK PPQKQEDLQP HPVKDQLYGI TYCLTSPPPW PETILLGFQH YLVMLGTTVL IPTMLVSKID ARNEDKVKLI QTLLFVSGIN TLFQSFFGTR 101: LPAVIGASYS YVPTTMSIVL AARYNDIMDP QKRFEQIMRG IQGALIIASF LHILVGFSGL WRNVTRFLSP LSAVPLVAFS GFGLYEQGFP MLAKCIEIGL 201: PEIILLVIFS QYIPHLMQGE TCSNFFHRFA VIFSVVIVWL YAYILTIGGA YSNTEINTQI SCRTDRAGII SASPWIRVPH PIQWGGAPTF NAGDIFAMMA 301: ASFVSLVEST GTYIAVSRYA SATPIPPSVL SRGIGWQGFG ILLCGLFGAG NATSVSVENA GLLAVTRVGS RRVIQVAAGF MIFFSILGKF GAIFASIPAP 401: IVAALYCLFF SYVGAGGLSL IQFCNLNSFR TKFILGFSIF MGLSIPQYFY QYTTLETYGP VRTSATWFNN IINVPFSSKA FVSGILAFFL DTTLPPKDKT 501: TKKDRGLVWW KRFKSFQSDN RSEEFYSLPL NLSKYFPSH |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)