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AT1G10540.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21533090 (2011): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : nucleobase-ascorbate transporter 8
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
nucleobase-ascorbate transporter 8 (NAT8); FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Xanthine/uracil/vitamin C permease (InterPro:IPR006043); BEST Arabidopsis thaliana protein match is: nucleobase-ascorbate transporter 7 (TAIR:AT1G60030.1); Has 9247 Blast hits to 9232 proteins in 1900 species: Archae - 67; Bacteria - 7567; Metazoa - 351; Fungi - 128; Plants - 453; Viruses - 1; Other Eukaryotes - 680 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-549-MONOMEReggNOG:COG2233eggNOG:KOG1292EMBL:AC007067
EMBL:AY063935EMBL:AY096464EMBL:CP002684EnsemblPlants:AT1G10540
EnsemblPlants:AT1G10540.1entrez:837595GeneID:837595Genevisible:Q8VZQ5
GO:GO:0005215GO:GO:0005886GO:GO:0009506GO:GO:0016021
GO:GO:0055085Gramene:AT1G10540.1hmmpanther:PTHR11119hmmpanther:PTHR11119:SF50
HOGENOM:HOG000038202InParanoid:Q8VZQ5InterPro:IPR006043KEGG:ath:AT1G10540
OMA:CTITAVGPANTHER:PTHR11119PaxDb:Q8VZQ5Pfam:PF00860
Pfam:Q8VZQ5PhylomeDB:Q8VZQ5PRIDE:Q8VZQ5PRO:PR:Q8VZQ5
ProteinModelPortal:Q8VZQ5Proteomes:UP000006548Reactome:R-ATH-196836RefSeq:NP_172524.1
STRING:3702.AT1G10540.1TAIR:AT1G10540tair10-symbols:ATNAT8tair10-symbols:NAT8
TMHMM:TMhelixUniGene:At.27137UniProt:Q8VZQ5
Coordinates (TAIR10) chr1:-:3475024..3477756
Molecular Weight (calculated) 59518.80 Da
IEP (calculated) 9.37
GRAVY (calculated) 0.40
Length 539 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGDGVENAK PPQKQEDLQP HPVKDQLYGI TYCLTSPPPW PETILLGFQH YLVMLGTTVL IPTMLVSKID ARNEDKVKLI QTLLFVSGIN TLFQSFFGTR
101: LPAVIGASYS YVPTTMSIVL AARYNDIMDP QKRFEQIMRG IQGALIIASF LHILVGFSGL WRNVTRFLSP LSAVPLVAFS GFGLYEQGFP MLAKCIEIGL
201: PEIILLVIFS QYIPHLMQGE TCSNFFHRFA VIFSVVIVWL YAYILTIGGA YSNTEINTQI SCRTDRAGII SASPWIRVPH PIQWGGAPTF NAGDIFAMMA
301: ASFVSLVEST GTYIAVSRYA SATPIPPSVL SRGIGWQGFG ILLCGLFGAG NATSVSVENA GLLAVTRVGS RRVIQVAAGF MIFFSILGKF GAIFASIPAP
401: IVAALYCLFF SYVGAGGLSL IQFCNLNSFR TKFILGFSIF MGLSIPQYFY QYTTLETYGP VRTSATWFNN IINVPFSSKA FVSGILAFFL DTTLPPKDKT
501: TKKDRGLVWW KRFKSFQSDN RSEEFYSLPL NLSKYFPSH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)