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AT5G39220.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 0.651
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : alpha/beta-Hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
alpha/beta-Hydrolases superfamily protein; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT1G13820.1); Has 3137 Blast hits to 3135 proteins in 734 species: Archae - 56; Bacteria - 2199; Metazoa - 167; Fungi - 8; Plants - 225; Viruses - 0; Other Eukaryotes - 482 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0596eggNOG:KOG1454EMBL:BT004189EMBL:BT005407
EMBL:CP002688EnsemblPlants:AT5G39220EnsemblPlants:AT5G39220.1entrez:833918
ESTHER:arath-AT5G39220Gene3D:3.40.50.1820GeneID:833918GO:GO:0016787
Gramene:AT5G39220.1hmmpanther:PTHR10992hmmpanther:PTHR10992:SF825HOGENOM:HOG000232963
InterPro:IPR000073InterPro:IPR029058KEGG:ath:AT5G39220MEROPS:S33.A16
OMA:SFIMSSCPfam:PF12697PhylomeDB:Q84JL7PRINTS:PR00111
Proteomes:UP000006548RefSeq:NP_198738.2SMR:Q84JL7STRING:3702.AT5G39220.1
SUPFAM:SSF53474TAIR:AT5G39220UniGene:At.6609UniProt:Q84JL7
Coordinates (TAIR10) chr5:+:15705913..15708039
Molecular Weight (calculated) 36851.00 Da
IEP (calculated) 8.33
GRAVY (calculated) 0.03
Length 330 amino acids
Sequence (TAIR10)
(BLAST)
001: MMGSLKIISP PPPATRFRQR VTANGDGFPT FLPKEIQNIK DPFARALAQR IVRIPVPLQM GNFRGSVMSS CIKPLVQLHD KSPVVLLHCF DSSCLEWRRT
101: YPLLEQACLE TWAIDVLGWG FSDLEKLPPC DAASKRHHLF ELWKTYIKRP MILVGPSLGA TVAVDFTATY PEAVDKLVLI NANAYSEGTG RLKELPKSIA
201: YAGVKLLKSF PLRLLANVLA FCSSPLSENI DWTNIGRLHC QMPWWEDAMV DFMISGGYNV ASHIKHIDHK TLVVCSENDQ IVSNQLSVKL LCELANAVLR
301: EVPDSGHLPH VENPKHIVKL ISDFASGKLY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)