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AT1G09470.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: cotyledon; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26770.1); Has 55019 Blast hits to 30094 proteins in 2088 species: Archae - 730; Bacteria - 6553; Metazoa - 28961; Fungi - 4800; Plants - 2559; Viruses - 111; Other Eukaryotes - 11305 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JWADeggNOG:ENOG4110549EMBL:CP002684EMBL:DQ056449
EnsemblPlants:AT1G09470EnsemblPlants:AT1G09470.1entrez:837470ExpressionAtlas:Q4PT37
GeneID:837470Gramene:AT1G09470.1HOGENOM:HOG000237789ncoils:Coil
OMA:ISAHWRFPhylomeDB:Q4PT37Proteomes:UP000006548RefSeq:NP_172418.2
SMR:Q4PT37STRING:3702.AT1G09470.1TAIR:AT1G09470UniGene:At.44972
UniGene:At.51536UniGene:At.70852UniProt:Q4PT37
Coordinates (TAIR10) chr1:-:3055391..3056931
Molecular Weight (calculated) 39003.60 Da
IEP (calculated) 9.15
GRAVY (calculated) -0.88
Length 336 amino acids
Sequence (TAIR10)
(BLAST)
001: MPTSVSLRED DPLLKDLSEK KQSFRRNVVS LATELKEART RLAEQERSCS KEAMSRQEAE TRVKRMEDEM HELAKELNEK VEQIRASDVA TEKFVKELAD
101: IKSQLAATHA TAEASALSAE SAHSHCRVLS KQLHERTGSL KEHEDQVTRL GEQLENLRKE LRVRESSQKQ LRDELLKVEG DIMRAVSVVK TKENSEVRNM
201: LNEDTPKNSE RINKLLTAKD DEIARLRDEL KIISAHWRFK TKELEDQVEN QRRIDQELKK KVLKLEFCLR ETRIQTRKLQ KMGERNDVAI QELKEQLAAK
301: KQHEADHSSN QNLWDKSGFK IVVSMSMLIL VAFSRR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)