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AT1G02860.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : SPX (SYG1/Pho81/XPR1) domain-containing protein
Curator
Summary (TAIR10)
Encodes a likely ubiquitin E3 ligase with RING and SPX domains that is involved in mediating immune responses. Targeted by MIR827.
Computational
Description (TAIR10)
nitrogen limitation adaptation (NLA); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), SPX, N-terminal (InterPro:IPR004331); BEST Arabidopsis thaliana protein match is: SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related (TAIR:AT2G38920.1); Has 2026 Blast hits to 2013 proteins in 210 species: Archae - 0; Bacteria - 0; Metazoa - 1472; Fungi - 138; Plants - 261; Viruses - 0; Other Eukaryotes - 155 (source: NCBI BLink).
Protein Annotations
EC:6.3.2.-eggNOG:ENOG410IJF0eggNOG:ENOG4110S99EMBL:AC009525
EMBL:AK229396EMBL:AY088823EMBL:BT044616EMBL:CP002684
EMBL:DQ059096EnsemblPlants:AT1G02860EnsemblPlants:AT1G02860.1entrez:839559
Gene3D:3.30.40.10GeneID:839559Genevisible:Q9SRX9GO:GO:0004842
GO:GO:0005634GO:GO:0005886GO:GO:0008270GO:GO:0009626
GO:GO:0009627GO:GO:0009697GO:GO:0009751GO:GO:0010167
GO:GO:0010337GO:GO:0016607GO:GO:0016874GO:GO:0042742
GO:GO:0043161GO:GO:0061630GO:GO:0080021hmmpanther:PTHR23041
hmmpanther:PTHR23041:SF64HOGENOM:HOG000240281InParanoid:Q9SRX9InterPro:IPR001841
InterPro:IPR004331InterPro:IPR013083InterPro:IPR017907InterPro:IPR033326
iPTMnet:Q9SRX9KEGG:ath:AT1G02860KO:K16275OMA:NEMSAVI
PANTHER:PTHR23041:SF64PaxDb:Q9SRX9Pfam:PF13920Pfam:Q9SRX9
Pfscan:PS50089Pfscan:PS51382PhylomeDB:Q9SRX9PIR:H86158
PRIDE:Q9SRX9PRO:PR:Q9SRX9PROSITE:PS00518PROSITE:PS50089
PROSITE:PS51382ProteinModelPortal:Q9SRX9Proteomes:UP000006548RefSeq:NP_001117218.1
RefSeq:NP_563667.1scanprosite:PS00518SMART:SM00184SMR:Q9SRX9
STRING:3702.AT1G02860.1SUPFAM:SSF57850TAIR:AT1G02860tair10-symbols:BAH1
tair10-symbols:NLAUniGene:At.22880UniGene:At.46895UniPathway:UPA00143
UniProt:Q9SRX9
Coordinates (TAIR10) chr1:+:635474..637083
Molecular Weight (calculated) 38411.50 Da
IEP (calculated) 8.32
GRAVY (calculated) -0.42
Length 335 amino acids
Sequence (TAIR10)
(BLAST)
001: MKFCKKYEEY MQGQKEKKNL PGVGFKKLKK ILKRCRRNHV PSRISFTDAI NHNCSRECPV CDGTFFPELL KEMEDVVGWF NEHAQKLLEL HLASGFTKCL
101: TWLRGNSRKK DHHGLIQEGK DLVNYALINA VAIRKILKKY DKIHESRQGQ AFKTQVQKMR IEILQSPWLC ELMAFHINLK ESKKESGATI TSPPPPVHAL
201: FDGCALTFDD GKPLLSCELS DSVKVDIDLT CSICLDTVFD PISLTCGHIY CYMCACSAAS VNVVDGLKTA EATEKCPLCR EDGVYKGAVH LDELNILLKR
301: SCRDYWEERR KTERAERLQQ AKEYWDYQCR SFTGI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)