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AT4G36860.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : LIM domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
LIM domain-containing protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781), Ubiquitin interacting motif (InterPro:IPR003903), Protein of unknown function DUF3633 (InterPro:IPR022087); BEST Arabidopsis thaliana protein match is: DA1 (TAIR:AT1G19270.1); Has 6004 Blast hits to 4271 proteins in 323 species: Archae - 7; Bacteria - 228; Metazoa - 4096; Fungi - 190; Plants - 320; Viruses - 67; Other Eukaryotes - 1096 (source: NCBI BLink).
Protein Annotations
BioGrid:15120eggNOG:ENOG410XRD4eggNOG:KOG1703EMBL:AL161590
EMBL:AY062599EMBL:AY114659EMBL:CP002687EMBL:Z99708
EnsemblPlants:AT4G36860EnsemblPlants:AT4G36860.1entrez:829839Gene3D:2.10.110.10
GeneID:829839Genevisible:Q8W4F0GO:GO:0005886GO:GO:0008270
GO:GO:0043130Gramene:AT4G36860.1hmmpanther:PTHR24209hmmpanther:PTHR24209:SF13
HOGENOM:HOG000239946InParanoid:Q8W4F0IntAct:Q8W4F0InterPro:IPR001781
InterPro:IPR003903InterPro:IPR022087iPTMnet:Q8W4F0KEGG:ath:AT4G36860
ncoils:CoilOMA:CYKEQHHPaxDb:Q8W4F0Pfam:PF00412
Pfam:PF12315Pfam:Q8W4F0Pfscan:PS50023Pfscan:PS50330
PIR:C85435PRIDE:Q8W4F0PRO:PR:Q8W4F0PROSITE:PS00142
PROSITE:PS00478PROSITE:PS50023PROSITE:PS50330ProteinModelPortal:Q8W4F0
Proteomes:UP000006548RefSeq:NP_195404.6scanprosite:PS00478SMART:SM00132
SMART:SM00726SMR:Q8W4F0STRING:3702.AT4G36860.1SUPFAM:SSF57716
TAIR:AT4G36860UniGene:At.43898UniProt:Q8W4F0
Coordinates (TAIR10) chr4:-:17358580..17361189
Molecular Weight (calculated) 63312.00 Da
IEP (calculated) 5.02
GRAVY (calculated) -0.66
Length 553 amino acids
Sequence (TAIR10)
(BLAST)
001: MGWLTKILKG SSHKFSDGQC NGRYREDRNL EGPRYSAEGS DFDKEEIECA IALSLSEQEH VIPQDDKGKK IIEYKSETEE DDDDDEDEDE EYMRAQLEAA
101: EEEERRVAQA QIEEEEKRRA EAQLEETEKL LAKARLEEEE MRRSKAQLEE DELLAKALQE SMNVGSPPRY DPGNILQPYP FLIPSSHRIC VGCQAEIGHG
201: RFLSCMGGVW HPECFCCNAC DKPIIDYEFS MSGNRPYHKL CYKEQHHPKC DVCHNFIPTN PAGLIEYRAH PFWMQKYCPS HERDGTPRCC SCERMEPKDT
301: KYLILDDGRK LCLECLDSAI MDTHECQPLY LEIREFYEGL HMKVEQQIPM LLVERSALNE AMEGEKHGHH HLPETRGLCL SEEQTVTTVL RRPRIGAGYK
401: LIDMITEPCR LIRRCEVTAI LILYGLPRLL TGSILAHEMM HAWLRLNGYP NLRPEVEEGI CQVLAHMWLE SETYAGSTLV DIASSSSSAV VSASSKKGER
501: SDFEKKLGEF FKHQIESDSS SAYGDGFRQG NQAVLKHGLR RTLDHIRLTG TFP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)