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AT1G55810.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : uridine kinase-like 3
Curator
Summary (TAIR10)
One of the homologous genes predicted to encode proteins with UPRT domains (Uracil phosphoribosyltransferase). Five of these genes (At5g40870, At3g27190, At1g55810, At4g26510 and At3g27440) show a high level of identity, and are annotated as also containing a N-terminal uracil kinase (UK) domain. These genes are referred to as UKL1 (UK-like 1), UKL2, UKL3, UKL4 and UKL5, respectively.
Computational
Description (TAIR10)
uridine kinase-like 3 (UKL3); FUNCTIONS IN: uracil phosphoribosyltransferase activity, phosphotransferase activity, alcohol group as acceptor, kinase activity, ATP binding; INVOLVED IN: biosynthetic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribulokinase/uridine kinase (InterPro:IPR006083), Uridine kinase (InterPro:IPR000764); BEST Arabidopsis thaliana protein match is: uridine kinase-like 4 (TAIR:AT4G26510.2); Has 12937 Blast hits to 12923 proteins in 2615 species: Archae - 215; Bacteria - 9909; Metazoa - 552; Fungi - 508; Plants - 588; Viruses - 2; Other Eukaryotes - 1163 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G55810-MONOMERBioCyc:ARA:GQT-164-MONOMERBioCyc:ARA:GQT-874-MONOMERBioGrid:27256
EC:2.4.2.9EC:2.7.1.48eggNOG:COG0035eggNOG:COG0572
eggNOG:KOG4203EMBL:AC002304EMBL:AK317232EMBL:AY072218
EMBL:AY122946EMBL:CP002684EnsemblPlants:AT1G55810EnsemblPlants:AT1G55810.1
EnsemblPlants:AT1G55810.3entrez:842031Gene3D:3.40.50.2020Gene3D:3.40.50.300
GeneID:842031Genevisible:Q8VYB2GO:GO:0004845GO:GO:0004849
GO:GO:0005524GO:GO:0005525GO:GO:0005829GO:GO:0006206
GO:GO:0043097GO:GO:0044206GO:GO:0044211gramene_pathway:2.4.2.9
gramene_pathway:2.7.1.48gramene_pathway:PWYQT-4445hmmpanther:PTHR10285hmmpanther:PTHR10285:SF75
HOGENOM:HOG000262757InParanoid:Q8VYB2InterPro:IPR000764InterPro:IPR006083
InterPro:IPR027417InterPro:IPR029057InterPro:IPR029930KEGG:00240+2.4.2.9+2.7.1.48
KEGG:00240+2.7.1.48KEGG:00983+2.7.1.48KEGG:ath:AT1G55810KO:K00876
OMA:HDEENILPANTHER:PTHR10285:SF75PaxDb:Q8VYB2Pfam:PF00485
Pfam:PF14681Pfam:Q8VYB2PhylomeDB:Q8VYB2PRIDE:Q8VYB2
PRINTS:PR00988PRO:PR:Q8VYB2ProteinModelPortal:Q8VYB2Proteomes:UP000006548
Reactome:R-ATH-73614RefSeq:NP_175977.1RefSeq:NP_974036.2RefSeq:NP_974037.1
SMR:Q8VYB2STRING:3702.AT1G55810.1SUPFAM:SSF52540SUPFAM:SSF53271
TAIR:AT1G55810tair10-symbols:UKL3TIGRfam:TIGR00235TIGRFAMs:TIGR00235
UniGene:At.27532UniPathway:UPA00574UniPathway:UPA00579UniProt:Q8VYB2
Coordinates (TAIR10) chr1:+:20861273..20864003
Molecular Weight (calculated) 52446.20 Da
IEP (calculated) 6.60
GRAVY (calculated) -0.21
Length 466 amino acids
Sequence (TAIR10)
(BLAST)
001: MASKSDVNII ETSSKVHFSG FHQMDGLASN RPEQMAEEEE HGQPFVIGVA GGAASGKTTV CDMIMQQLHD QRAVVVNQDS FYHNVNEVEL VRVHDYNFDH
101: PDAFDTEQLL SSMEKLRKGQ AVDIPNYDFK SYKNNVFPPR RVNPSDVIIL EGILIFHDPR VRDLMNMKIF VDADADVRLA RRIKRDTVEK GRDIATVLDQ
201: YSKFVKPAFE DFILPTKKYA DIIIPRGGDN HVAIDLIVQH IHTKLGQHDL CKIYPNLYVI QSTFQIRGMH TLIRDSKTTK HDFIFYSDRL IRLVVEHGLG
301: HLPFTEKQVV TPTGSVYSGV DFCKKLCGVS VIRSGESMEN ALRACCKGIK IGKILIHREG DNGQQLIYEK LPSDISERHV LLLDPILGTG NSAVQAIRLL
401: ISKGVPESNI IFLNLISAPE GVNVVCKKFP RIKIVTSEIE LGLNDEFRVV PGMGEFGDRY FGTDDE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)