AT1G02640.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 ASURE: extracellular What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : beta-xylosidase 2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
beta-xylosidase 2 (BXL2); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: beta-xylosidase 1 (TAIR:AT5G49360.1); Has 9578 Blast hits to 8300 proteins in 1224 species: Archae - 65; Bacteria - 5802; Metazoa - 17; Fungi - 1614; Plants - 527; Viruses - 0; Other Eukaryotes - 1553 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:564293..567580 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 82989.60 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.42 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.08 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 768 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MILHKMAFLA VILFFLISSS SVCVHSRETF ACDTKDAATA TLRFCQLSVP IPERVRDLIG RLTLAEKVSL LGNTAAAIPR LGIKGYEWWS EALHGVSNVG 101: PGTKFGGVYP AATSFPQVIT TVASFNASLW ESIGRVVSNE ARAMYNGGVG GLTYWSPNVN ILRDPRWGRG QETPGEDPVV AGKYAASYVR GLQGNDRSRL 201: KVAACCKHFT AYDLDNWNGV DRFHFNAKVS KQDIEDTFDV PFRMCVKEGN VASIMCSYNQ VNGVPTCADP NLLKKTIRNQ WGLNGYIVSD CDSVGVLYDT 301: QHYTGTPEEA AADSIKAGLD LDCGPFLGAH TIDAVKKNLL RESDVDNALI NTLTVQMRLG MFDGDIAAQP YGHLGPAHVC TPVHKGLALE AAQQGIVLLK 401: NHGSSLPLSS QRHRTVAVIG PNSDATVTMI GNYAGVACGY TSPVQGITGY ARTIHQKGCV DVHCMDDRLF DAAVEAARGA DATVLVMGLD QSIEAEFKDR 501: NSLLLPGKQQ ELVSRVAKAA KGPVILVLMS GGPIDISFAE KDRKIPAIVW AGYPGQEGGT AIADILFGSA NPGGKLPMTW YPQDYLTNLP MTEMSMRPVH 601: SKRIPGRTYR FYDGPVVYPF GHGLSYTRFT HNIADAPKVI PIAVRGRNGT VSGKSIRVTH ARCDRLSLGV HVEVTNVGSR DGTHTMLVFS APPGGEWAPK 701: KQLVAFERVH VAVGEKKRVQ VNIHVCKYLS VVDRAGNRRI PIGDHGIHIG DESHTVSLQA STLGVIKS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)