AT1G01980.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : FAD-binding Berberine family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
member of Reticuline oxidase-like family | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ATSEC1A; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT1G11770.1); Has 4204 Blast hits to 4007 proteins in 589 species: Archae - 34; Bacteria - 1730; Metazoa - 0; Fungi - 1606; Plants - 712; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:340374..341999 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 60106.10 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.15 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.22 | ||||||||||||||||||||||||||||||||||||||||
| Length | 541 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKLSCLVFLI VSSLVSSSLA TAPPNTSIYE SFLQCFSNQT GAPPEKLCDV VLPQSSASFT PTLRAYIRNA RFNTSTSPKP LLVIAARSEC HVQATVLCTK 101: SLNFQLKTRS GGHDYDGVSY ISNRPFFVLD MSYLRNITVD MSDDGGSAWV GAGATLGEVY YNIWQSSKTH GTHGFPAGVC PTVGAGGHIS GGGYGNMIRK 201: YGLSVDYVTD AKIVDVNGRI LDRKSMGEDL FWAIGGGGGA SFGVILSFKI KLVPVPPRVT VFRVEKTLVE NALDMVHKWQ FVAPKTSPDL FMRLMLQPVT 301: RNTTQTVRAS VVALFLGKQS DLMSLLTKEF PELGLKPENC TEMTWIQSVM WWANNDNATV IKPEILLDRN PDSASFLKRK SDYVEKEISK DGLDFLCKKL 401: MEAGKLGLVF NPYGGKMSEV ATTATPFPHR KRLFKVQHSM NWKDPGTDVE SSFMEKTRSF YSYMAPFVTK NPRHTYLNYR DLDIGINSHG PNSYREAEVY 501: GRKYFGENFD RLVKVKTAVD PENFFRDEQS IPTLPTKPSS S |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)