AT5G47250.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.850 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : LRR and NB-ARC domains-containing disease resistance protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
LRR and NB-ARC domains-containing disease resistance protein; FUNCTIONS IN: ATP binding; INVOLVED IN: apoptosis, defense response; LOCATED IN: mitochondrion; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT1G12220.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:19186045..19188576 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 94806.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.58 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.12 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 843 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNCCWQVVEP CYKSALSYLC VKVGNICMLK ENLVLLKSAF DELKAEKEDV VNRVNAGELK GGQRLAIVAT WLSQVEIIEE NTKQLMDVAS ARDASSQNAS 101: AVRRRLSTSG CWFSTCNLGE KVFKKLTEVK SLSGKDFQEV TEQPPPPVVE VRLCQQTVGL DTTLEKTWES LRKDENRMLG IFGMGGVGKT TLLTLINNKF 201: VEVSDDYDVV IWVESSKDAD VGKIQDAIGE RLHICDNNWS TYSRGKKASE ISRVLRDMKP RFVLLLDDLW EDVSLTAIGI PVLGKKYKVV FTTRSKDVCS 301: VMRANEDIEV QCLSENDAWD LFDMKVHCDG LNEISDIAKK IVAKCCGLPL ALEVIRKTMA SKSTVIQWRR ALDTLESYRS EMKGTEKGIF QVLKLSYDYL 401: KTKNAKCFLY CALFPKAYYI KQDELVEYWI GEGFIDEKDG RERAKDRGYE IIDNLVGAGL LLESNKKVYM HDMIRDMALW IVSEFRDGER YVVKTDAGLS 501: QLPDVTDWTT VTKMSLFNNE IKNIPDDPEF PDQTNLVTLF LQNNRLVDIV GKFFLVMSTL VVLDLSWNFQ ITELPKGISA LVSLRLLNLS GTSIKHLPEG 601: LGVLSKLIHL NLESTSNLRS VGLISELQKL QVLRFYGSAA ALDCCLLKIL EQLKGLQLLT VTVNNDSVLE EFLGSTRLAG MTQGIYLEGL KVSFAAIGTL 701: SSLHKLEMVN CDITESGTEW EGKRRDQYSP STSSSEITPS NPWFKDLSAV VINSCIHLKD LTWLMYAANL ESLSVESSPK MTELINKEKA QGVGVDPFQE 801: LQVLRLHYLK ELGSIYGSQV SFPKLKLNKV DIENCPNLHQ RPL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)