AT5G64830.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : programmed cell death 2 C-terminal domain-containing protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
programmed cell death 2 C-terminal domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: apoptosis; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Programmed cell death protein 2, C-terminal (InterPro:IPR007320); BEST Arabidopsis thaliana protein match is: zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein (TAIR:AT4G02220.1); Has 591 Blast hits to 590 proteins in 194 species: Archae - 0; Bacteria - 0; Metazoa - 244; Fungi - 141; Plants - 96; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:25914911..25916074 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 33602.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 4.89 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.79 | ||||||||||||||||||||||||
| Length | 297 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPKCGTSEQS WRAFSIQKAI AKEKGSTKIA DLPVAFPKTH RLDGDDDDDD DDDEDFDFAS LAKALAEASS AAASITKKQK SKPSGNASSG TKAKPSPLKS 101: ETRVEDHIKL ETGAVVPCFY IYTKEEIPSK EVDRFSQNYS SLSIKDKGTG NNDESESEEK WEDEKYEYDK ALNADRTYLK FKKRLDANPE QCFRYWYGGK 201: PILATEDMKS PDKCRNCDSQ RHFEIQLMPP LIYFLHEGVV DKGIKQSLDN WDWMTLIVYT CSKSCANAVN GDWVVTEECV AVQYEKPMNL DHASFFK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)